Job Description P0A821 Confidence 99.89% Date Thu Jan 5 11:06:39 GMT 2012 Rank 101 Aligned Residues 306 % Identity 14% Template c1c4kA_ PDB info PDB header:lyase Chain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr) Resolution 2.70 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																				.																	.																								.															.	.	.	.	.	.
Query SS confidence																				.																	.																								.															.	.	.	.	.	.
Query Sequence		R	A	L	A	Q	L	L	C	R	I	T	G	A	E	D	A	C	I	.	V	N	N	N	A	A	A	V	L	L	M	L	A	A	T	A	.	S	G	K	E	V	V	V	S	R	G	E	L	V	E	I	G	G	A	F	R	I	P	D	.	V	M	R	Q	A	G	C	T	L	H	E	V	G	T	.	.	.	.	.	.
Query Conservation																				.																	.																								.															.	.	.	.	.	.
Alig confidence																				.																	.															.	.	.	.	.	.				.															.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		V	A	A	E	K	H	A	A	R	V	Y	N	A	D	K	T	Y	F	V	L	G	G	S	S	N	A	N	N	T	V	T	S	A	L	V	S	N	G	D	L	V	L	F	D	R	N	N	H	K	S	.	.	.	.	.	.	V	Y	N	S	A	L	A	M	A	G	G	R	P	V	Y	L	Q	T	N	R	N	P	Y	G
Template Known Secondary structure												T	T		S						S	S																T	T							T	T					.	.	.	.	.	.						T	T	T	T													T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
								203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.											220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	T	N	R	T	H	A	N	D	Y	R	Q	A	V	N	E	N	T	.	.	.	.	.	.	.	.	.	.	A	L	L	M	K	V	H	T	S	N	Y	S	I	Q	G	F	T	K	A	I	D	E	A	E	L	V	A	L	G	K	E	L	D	V	P	V	V	T	D	L	G	S	G	S	L	V	D
Query Conservation		.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																																																		.	.	.	.	.
Template Sequence		F	I	G	G	I	Y	D	S	D	F	D	E	K	K	I	R	E	L	A	A	K	V	D	P	E	R	A	K	W	K	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	G	T	I	Y	.	.	.	.	.	N	A	H	E	V	V	K	R	I	G	H	L	C	D	Y	I	E	F	D	S	A	W	V	G	Y	E	Q
Template Known Secondary structure								G	G	G	S									T	T	T	S	S					T		S			B	S						S	B		T	T	S				.	.	.	.	.										G	G	G	B	S							T	T			G	G	G
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.										.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																							.	.	.	.														.												.	.	.	.	.	.	.	.	.								.
Query SS confidence																							.	.	.	.														.												.	.	.	.	.	.	.	.	.								.
Query Sequence		L	S	Q	Y	G	L	P	K	E	P	M	P	Q	E	L	I	A	A	G	V	S	.	.	.	.	L	V	S	F	S	G	D	K	L	L	G	G	P	.	Q	A	G	I	I	V	G	K	K	E	M	.	.	.	.	.	.	.	.	.	I	A	R	L	Q	S	H	.	P	L	K	R	A	L	R	A	D	K	M	T	L
Query Conservation																							.	.	.	.														.												.	.	.	.	.	.	.	.	.								.
Alig confidence				.	.																		.	.	.	.														.												.	.	.	.	.	.	.	.	.								.
Template Conservation				.	.
Template Sequence		F	I	.	.	P	M	M	R	N	S	S	P	L	L	I	D	D	L	G	P	E	D	P	G	I	I	V	V	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	L	R	Y	C	D	H	K	H	F	N	N	S	F	N	L	F	M	S	T	S	P	F	Y	P	M	Y
Template Known Secondary structure		S	S	.	.	G	G	G	G	G	G		T	T	S						T	T	S													S	S			T	T									G	G	G	T	T	S	T	T															S		S	S
Template Predicted Secondary structure				.	.
Template SS confidence
		325	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.																												.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	L	E	A	T	L	R	L	Y	L	H	P	E	A	L	S	E	K	L	P	T	L	R	L	L	T	R	S	A	E	V	I	Q	I	Q	A	Q	R	L	Q	A	P	L	A	A	H	Y	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	A
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	L	D	V	N	A	A	M	Q	E	G	E	A	G	.	.	.	.	.	.	.	.	.	.	.	R	K	L	W	H	D	L	L	I	T	T	I	E	A	R	K	K	L	I	K	A	G	S	M	F	R	P	F	V	P	P	V	V	N	G	K	K	W	E	D	G	D	T	E	D	M	A	N	N	I	D	Y	W	R
Template Known Secondary structure												S					.	.	.	.	.	.	.	.	.	.	.																					T	T		S	S			S	S		S			T	T			G	G	G	S						T	T		G	G	G	G	B
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.												.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.										.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	V	M	P	C	L	S	Q	I	G	S	G	S	L	P	V	D	R	L	P	S	A	A	L	T	F	T	P	H	D	G	R	.	.	.	.	.	.	.	.	.	G	S	H	L	E	S	L	A	A	R	W	R	E	L	P	V	P	V	I	G	R	I	Y	D	G	R	L	W	L	D	L	R	C	L	E	D	E	Q
Query Conservation																																			.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.													.	.
Template Conservation																																																								.	.
Template Sequence		F	E	K	G	A	K	W	H	A	Y	E	G	Y	G	D	N	Q	Y	Y	V	D	P	N	K	F	M	L	T	T	P	G	I	N	P	E	T	G	D	Y	E	D	F	G	V	P	A	T	I	V	A	N	Y	L	R	.	.	D	H	G	I	I	P	E	K	S	D	L	N	S	I	L	F	L	M	T	P	A	E	T	P
Template Known Secondary structure				T	T		T	T	T			T	T			T	T						T	T							S	S			T	T	T	T				S	S													.	.		T	T				S				S	S								T	T
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.			.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		456	.	.	.	460	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	L	E	M	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	M	N	N	L	I	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		550	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions