Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	G	W	F	E	L	S	K	S	S	D	N	Q	F	R	F	V	L	K	A	G	N	G	E	T	I	L	T	S	E	L	Y	T	S	K	T	S	A	E	K	G	I	A	S	V	R	S	N	S	P	Q	E	E	R	Y	E	K	K	T
Secondary structure
SS confidence
Disorder		?	?	?																												?	?		?	?													?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Sequence		A	S	N	G	K	F	Y	F	N	L	K	A	A	N	H	Q	I	I	G	S	S	Q	M	Y	A	T	A	Q	S	R	E	T	G	I	A	S	V	K	A	N	G	T	S	Q	T	V	K	D	N	T
Secondary structure
SS confidence
Disorder					?																		?			?	?													?			?		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2k49 chain A Region: 1 - 110 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 65% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein so_3888; PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190 Phyre2 PDB 2k8e chain A Region: 1 - 110 Aligned: 110 Modelled: 110 Confidence: 100.0% Identity: 100% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein yegp; PDBTitle: solution nmr structure of protein of unknown function yegp from e.2 coli. ontario center for structural proteomics target ec0640_1_1233 northeast structural genomics consortium target et102. Phyre2 PDB 2k49 chain A domain 2 Region: 1 - 58 Aligned: 58 Modelled: 58 Confidence: 99.8% Identity: 71% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 2k8e chain A domain 1 Region: 1 - 58 Aligned: 58 Modelled: 58 Confidence: 99.8% Identity: 100% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 2k7i chain A domain 1 Region: 54 - 110 Aligned: 57 Modelled: 57 Confidence: 99.8% Identity: 28% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 2k7i chain B Region: 54 - 110 Aligned: 57 Modelled: 57 Confidence: 99.8% Identity: 28% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0339 protein atu0232; PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223. Phyre2 PDB 3bid chain A domain 1 Region: 56 - 109 Aligned: 54 Modelled: 54 Confidence: 99.7% Identity: 28% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 2k8e chain A domain 2 Region: 59 - 110 Aligned: 52 Modelled: 52 Confidence: 99.7% Identity: 100% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 2k49 chain A domain 1 Region: 59 - 110 Aligned: 52 Modelled: 52 Confidence: 99.7% Identity: 60% Fold: YegP-like Superfamily: YegP-like Family: YegP-like Phyre2 PDB 1st9 chain A Region: 67 - 98 Aligned: 32 Modelled: 32 Confidence: 55.7% Identity: 9% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 1jke chain A Region: 7 - 31 Aligned: 25 Modelled: 25 Confidence: 54.0% Identity: 8% Fold: DTD-like Superfamily: DTD-like Family: DTD-like Phyre2 PDB 2qz7 chain B Region: 6 - 20 Aligned: 15 Modelled: 15 Confidence: 52.2% Identity: 13% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein sco6318; PDBTitle: the crystal structure of a homologue of telluride resistance protein2 (terd), sco6318 from streptomyces coelicolor a3(2) Phyre2 PDB 1j7g chain A Region: 7 - 31 Aligned: 25 Modelled: 25 Confidence: 51.5% Identity: 12% Fold: DTD-like Superfamily: DTD-like Family: DTD-like Phyre2 PDB 2l5o chain A Region: 8 - 102 Aligned: 94 Modelled: 95 Confidence: 42.6% Identity: 9% PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution structure of a putative thioredoxin from neisseria2 meningitidis Phyre2 PDB 3jqx chain A Region: 4 - 75 Aligned: 55 Modelled: 55 Confidence: 39.5% Identity: 20% PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cademium Phyre2 PDB 3ko7 chain E Region: 7 - 31 Aligned: 25 Modelled: 25 Confidence: 38.8% Identity: 20% PDB header:hydrolase Chain: E: PDB Molecule:d-tyrosyl-trna(tyr) deacylase; PDBTitle: dtd from plasmodium falciparum in complex with d-lysine Phyre2 PDB 2qng chain A Region: 6 - 18 Aligned: 13 Modelled: 13 Confidence: 38.6% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sav2460; PDBTitle: crytal structure of unknown function protein sav2460 Phyre2 PDB 2dbo chain A Region: 7 - 31 Aligned: 25 Modelled: 25 Confidence: 34.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:d-tyrosyl-trna(tyr) deacylase; PDBTitle: crystal structure of d-tyr-trna(tyr) deacylase from aquifex aeolicus Phyre2 PDB 2fy6 chain A domain 1 Region: 67 - 97 Aligned: 31 Modelled: 31 Confidence: 33.1% Identity: 6% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 2b5x chain A domain 1 Region: 67 - 97 Aligned: 31 Modelled: 31 Confidence: 26.9% Identity: 10% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 1 c2k49A_ 2 c2k8eA_ 3 d2k49a2 4 d2k8ea1 5 d2k7ia1 6 c2k7iB_ 7 d3bida1 8 d2k8ea2 9 d2k49a1 10 d1st9a_ 11 d1jkea_ 12 c2qz7B_ 13 d1j7ga_ 14 c2l5oA_ 15 c3jqxA_ 16 c3ko7E_ 17 c2qngA_ 18 c2dboA_ 19 d2fy6a1 20 d2b5xa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2k49A_ 100.0 65 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein so_3888; PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190 2 c2k8eA_ 100.0 100 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0339 protein yegp; PDBTitle: solution nmr structure of protein of unknown function yegp from e.2 coli. ontario center for structural proteomics target ec0640_1_1233 northeast structural genomics consortium target et102. 3 d2k49a2 99.8 71 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 4 d2k8ea1 99.8 100 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 5 d2k7ia1 99.8 28 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 6 c2k7iB_ 99.8 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0339 protein atu0232; PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223. 7 d3bida1 99.7 28 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 8 d2k8ea2 99.7 100 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 9 d2k49a1 99.7 60 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 10 d1st9a_ 55.7 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 11 d1jkea_ 54.0 8 Fold:DTD-like Superfamily:DTD-like Family:DTD-like 12 c2qz7B_ 52.2 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein sco6318; PDBTitle: the crystal structure of a homologue of telluride resistance protein2 (terd), sco6318 from streptomyces coelicolor a3(2) 13 d1j7ga_ 51.5 12 Fold:DTD-like Superfamily:DTD-like Family:DTD-like 14 c2l5oA_ 42.6 9 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin; PDBTitle: solution structure of a putative thioredoxin from neisseria2 meningitidis 15 c3jqxA_ 39.5 20 PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cademium 16 c3ko7E_ 38.8 20 PDB header:hydrolase Chain: E: PDB Molecule:d-tyrosyl-trna(tyr) deacylase; PDBTitle: dtd from plasmodium falciparum in complex with d-lysine 17 c2qngA_ 38.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sav2460; PDBTitle: crytal structure of unknown function protein sav2460 18 c2dboA_ 34.0 16 PDB header:hydrolase Chain: A: PDB Molecule:d-tyrosyl-trna(tyr) deacylase; PDBTitle: crystal structure of d-tyr-trna(tyr) deacylase from aquifex aeolicus 19 d2fy6a1 33.1 6 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 20 d2b5xa1 26.9 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 21 d1h8la1 not modelled 26.6 16 Fold:Prealbumin-like Superfamily:Carboxypeptidase regulatory domain-like Family:Carboxypeptidase regulatory domain 22 c2b1kA_ not modelled 24.2 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein 23 c3or5A_ not modelled 24.1 6 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls 24 c3m86B_ not modelled 23.2 14 PDB header:protein binding Chain: B: PDB Molecule:amoebiasin-2; PDBTitle: crystal structure of the cysteine protease inhibitor, ehicp2, from2 entamoeba histolytica 25 c2f4nA_ not modelled 23.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein mj1651; PDBTitle: crystal structure of protein mj1651 from methanococcus2 jannaschii dsm 2661, pfam duf62 26 c3cmiA_ not modelled 22.8 9 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin hyr1; PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae 27 c3m2oB_ not modelled 22.3 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein; PDBTitle: crystal structure of a putative glyoxalase/bleomycin resistance2 protein from rhodopseudomonas palustris cga009 28 c2wgnB_ not modelled 22.1 21 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:inhibitor of cysteine peptidase compnd 3; PDBTitle: pseudomonas aeruginosa icp 29 d2r6gf1 not modelled 21.8 8 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 30 c2he3A_ not modelled 21.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 2; PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2) 31 c3gg4B_ not modelled 20.9 12 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 32 d1knga_ not modelled 19.9 6 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 33 c2kucA_ not modelled 19.6 3 PDB header:isomerase Chain: A: PDB Molecule:putative disulphide-isomerase; PDBTitle: solution structure of a putative disulphide-isomerase from bacteroides2 thetaiotaomicron 34 c3cxbA_ not modelled 19.1 7 PDB header:signaling protein Chain: A: PDB Molecule:protein sifa; PDBTitle: crystal structure of sifa and skip 35 d1dfca3 not modelled 18.8 16 Fold:beta-Trefoil Superfamily:Actin-crosslinking proteins Family:Fascin 36 d2hg7a1 not modelled 18.8 22 Fold:gpW/XkdW-like Superfamily:XkdW-like Family:XkdW-like 37 c2hg7A_ not modelled 18.8 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phage-like element pbsx protein xkdw; PDBTitle: solution nmr structure of phage-like element pbsx protein2 xkdw, northeast structural genomics consortium target sr355 38 c3g73A_ not modelled 18.7 26 PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding 39 c2okvC_ not modelled 18.5 8 PDB header:hydrolase Chain: C: PDB Molecule:probable d-tyrosyl-trna(tyr) deacylase 1; PDBTitle: c-myc dna unwinding element binding protein 40 c1dfcB_ not modelled 18.2 11 PDB header:structural protein Chain: B: PDB Molecule:fascin; PDBTitle: crystal structure of human fascin, an actin-crosslinking protein 41 d1k25a3 not modelled 17.9 18 Fold:Penicillin binding protein dimerisation domain Superfamily:Penicillin binding protein dimerisation domain Family:Penicillin binding protein dimerisation domain 42 d2ch5a2 not modelled 17.8 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 43 c3razA_ not modelled 17.1 6 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-related protein; PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b 44 c3ibzA_ not modelled 17.1 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative tellurium resistant like protein terd; PDBTitle: crystal structure of putative tellurium resistant like protein (terd)2 from streptomyces coelicolor a3(2) 45 c3erwG_ not modelled 15.8 14 PDB header:oxidoreductase Chain: G: PDB Molecule:sporulation thiol-disulfide oxidoreductase a; PDBTitle: crystal structure of stoa from bacillus subtilis 46 d1ee8a2 not modelled 15.2 32 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 47 c2kxvA_ not modelled 15.2 21 PDB header:unknown function Chain: A: PDB Molecule:tellurite resistance protein; PDBTitle: nmr structure and calcium-binding properties of the tellurite2 resistance protein terd from klebsiella pneumoniae 48 d1fyhb1 not modelled 14.8 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 49 c1x60A_ not modelled 14.8 13 PDB header:hydrolase Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc 50 c2l57A_ not modelled 14.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens 51 d1dfca4 not modelled 14.4 26 Fold:beta-Trefoil Superfamily:Actin-crosslinking proteins Family:Fascin 52 d1z5ye1 not modelled 14.2 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 53 c1k82D_ not modelled 14.2 18 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 54 c3eytA_ not modelled 14.1 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 55 d1k3xa2 not modelled 14.0 15 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 56 c3f9uA_ not modelled 13.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis 57 d2f8aa1 not modelled 13.4 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 58 c3nf5A_ not modelled 13.4 13 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup116; PDBTitle: crystal structure of the c-terminal domain of nuclear pore complex2 component nup116 from candida glabrata 59 c2k3iA_ not modelled 13.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yiis; PDBTitle: solution nmr structure of protein yiis from shigella2 flexneri. northeast structural genomics consortium target3 sfr90 60 d1y6kr1 not modelled 12.7 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 61 c3kh7A_ not modelled 12.6 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa 62 c3ixrA_ not modelled 12.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant 63 c3hz6A_ not modelled 12.2 12 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 64 d2je8a3 not modelled 11.6 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 65 c2p5qA_ not modelled 11.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 5; PDBTitle: crystal structure of the poplar glutathione peroxidase 5 in2 the reduced form 66 c3fcdB_ not modelled 11.0 13 PDB header:lyase Chain: B: PDB Molecule:lyase; PDBTitle: crystal structure of a putative glyoxalase from an2 environmental bacteria 67 c2rp4C_ not modelled 11.0 28 PDB header:transcription Chain: C: PDB Molecule:transcription factor p53; PDBTitle: solution structure of the oligomerization domain in dmp53 68 c3fn2A_ not modelled 10.9 21 PDB header:transferase Chain: A: PDB Molecule:putative sensor histidine kinase domain; PDBTitle: crystal structure of a putative sensor histidine kinase domain from2 clostridium symbiosum atcc 14940 69 d1wp0a1 not modelled 10.9 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 70 c2yugA_ not modelled 10.7 25 PDB header:gene regulation Chain: A: PDB Molecule:protein frg1; PDBTitle: solution structure of mouse frg1 protein 71 d1mpya1 not modelled 10.5 4 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 72 d1pyya3 not modelled 10.3 19 Fold:Penicillin binding protein dimerisation domain Superfamily:Penicillin binding protein dimerisation domain Family:Penicillin binding protein dimerisation domain 73 c2gzvA_ not modelled 10.2 17 PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target) 74 d1k82a2 not modelled 9.7 18 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 75 c2xpoB_ not modelled 9.6 33 PDB header:transcription Chain: B: PDB Molecule:chromatin structure modulator; PDBTitle: crystal structure of a spt6-iws1(spn1) complex from2 encephalitozoon cuniculi, form ii 76 d1wzla1 not modelled 9.6 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 77 c2b7kD_ not modelled 9.6 18 PDB header:metal binding protein Chain: D: PDB Molecule:sco1 protein; PDBTitle: crystal structure of yeast sco1 78 c2aivA_ not modelled 9.6 14 PDB header:transport protein Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116; PDBTitle: multiple conformations in the ligand-binding site of the2 yeast nuclear pore targeting domain of nup116p 79 c3c12A_ not modelled 9.4 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:flagellar protein; PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly 80 c2v1mA_ not modelled 9.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase; PDBTitle: crystal structure of schistosoma mansoni glutathione2 peroxidase 81 d1rqpa2 not modelled 9.1 21 Fold:Bacterial fluorinating enzyme, N-terminal domain Superfamily:Bacterial fluorinating enzyme, N-terminal domain Family:Bacterial fluorinating enzyme, N-terminal domain 82 d1aopa2 not modelled 8.8 15 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 83 d1t6sa1 not modelled 8.7 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like 84 c2p31B_ not modelled 8.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione peroxidase 7; PDBTitle: crystal structure of human glutathione peroxidase 7 85 d1rwua_ not modelled 8.7 16 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 86 c1rwuA_ not modelled 8.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 87 c2kzrA_ not modelled 8.6 25 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase otu1; PDBTitle: solution nmr structure of ubiquitin thioesterase otu1 (ec 3.1.2.-)2 from mus musculus, northeast structural genomics consortium target3 mmt2a 88 d2ho2a1 not modelled 8.6 16 Fold:WW domain-like Superfamily:WW domain Family:WW domain 89 c3dwvB_ not modelled 8.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione peroxidase-like protein; PDBTitle: glutathione peroxidase-type tryparedoxin peroxidase,2 oxidized form 90 c2bsdC_ not modelled 8.2 18 PDB header:receptor Chain: C: PDB Molecule:receptor binding protein; PDBTitle: structure of lactococcal bacteriophage p2 receptor binding2 protein 91 d1tocr1 not modelled 8.2 18 Fold:BPTI-like Superfamily:BPTI-like Family:Soft tick anticoagulant proteins 92 d1ys7a1 not modelled 8.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 93 c3gl3D_ not modelled 7.9 17 PDB header:oxidoreductase Chain: D: PDB Molecule:putative thiol:disulfide interchange protein PDBTitle: crystal structure of a putative thiol:disulfide interchange2 protein dsbe from chlorobium tepidum 94 c3co7C_ not modelled 7.9 15 PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna 95 c2cw5B_ not modelled 7.7 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:bacterial fluorinating enzyme homolog; PDBTitle: crystal structure of a conserved hypothetical protein from2 thermus thermophilus hb8 96 d1r2za2 not modelled 7.7 14 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 97 d1m7xa1 not modelled 7.7 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 98 c3g12A_ not modelled 7.6 10 PDB header:lyase Chain: A: PDB Molecule:putative lactoylglutathione lyase; PDBTitle: crystal structure of a putative lactoylglutathione lyase2 from bdellovibrio bacteriovorus 99 c1w3gA_ not modelled 7.5 24 PDB header:toxin/lectin Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus; PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0