Job Description P77690 Confidence 99.92% Date Thu Jan 5 12:31:41 GMT 2012 Rank 156 Aligned Residues 334 % Identity 18% Template d1rv3a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.40

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		2	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.										.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.					.	.	.	.	60	.
Predicted Secondary structure								.	.																						.	.	.	.	.	.	.	.	.												.	.	.	.											.							.	.	.	.
Query SS confidence								.	.																						.	.	.	.	.	.	.	.	.												.	.	.	.											.							.	.	.	.
Query Sequence		S	E	F	L	P	F	.	.	S	R	P	A	M	G	V	E	E	L	A	A	V	K	E	V	L	E	S	G	W	.	.	.	.	.	.	.	.	.	I	T	T	G	P	K	N	Q	A	L	E	.	.	.	.	Q	A	F	C	Q	L	T	G	N	Q	.	H	A	I	A	V	S	.	.	.	.	S	A	T	A	G	M
Query Conservation								.	.																						.	.	.	.	.	.	.	.	.												.	.	.	.											.							.	.	.	.
Alig confidence								.	.																						.	.	.	.	.	.	.	.	.												.	.	.	.											.							.	.	.	.
Template Conservation
Template Sequence		R	V	G	L	E	L	I	A	S	E	N	F	A	S	R	A	V	L	E	A	L	G	S	C	L	N	N	K	Y	S	L	G	Y	P	G	Q	R	Y	Y	G	G	T	E	H	I	D	E	L	E	T	L	C	Q	K	R	A	L	Q	A	Y	G	L	D	P	Q	C	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N
Template Known Secondary structure			S	S					T	T													T	S	G	G	G	T							T	T			S	S	S																				T	T			T	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.											.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		H	I	T	L	M	A	L	K	I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	S	L	L	G	A	T	P	.	.	.	.	.	.	.	.	.	.	V	M	V	D	V	D	R	D	T	L	M	V	T	P	E	A	I	E	S	A	I	.	.	T	P	R	T	K	A	I	I	P	V	H
Query Conservation																																						.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence									.																													.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation									.
Template Sequence		F	A	V	Y	T	A	L	.	V	E	P	H	G	R	I	M	G	L	D	L	P	D	G	G	H	L	T	H	G	F	M	T	D	K	K	K	I	S	A	T	S	I	F	F	E	S	M	A	Y	K	V	N	P	D	T	G	Y	I	D	Y	D	R	L	E	E	N	A	R	L	F	H	P	K	L	I	I	A	G	T	S
Template Known Secondary structure									.	T		T	T								G	G	G	T			G	G	G			B		S	S		B		S						S							B		T	T	T		S	B															S							S
Template Predicted Secondary structure									.
Template SS confidence
		125	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.								.	.	200	.
Predicted Secondary structure																																												.																											.	.	.	.	.	.	.
Query SS confidence																																												.																											.	.	.	.	.	.	.
Query Sequence		Y	A	G	A	P	A	D	I	D	A	I	R	A	I	G	E	R	Y	G	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	.	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	G	G	L	I	V	T	D	N	E	.	.	.	.	.	.	.	N	L	A	R
Query Conservation																																												.																											.	.	.	.	.	.	.
Alig confidence																																												.																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	Y	S	R	N	L	D	Y	G	R	L	R	K	I	A	D	E	N	G	A	Y	L	M	A	D	M	A	H	I	S	G	L	V	V	A	G	V	V	P	S	P	F	E	H	C	H	V	V	T	T	T	T	H	K	T	L	R	G	C	R	A	G	M	I	F	Y	R	R	G	V	R	S	E	I	L	Y	N	L	E	S
Template Known Secondary structure		S			S														T	T								T	T	T							T	S	S			G	G	G	T		S						S	S	G	G	G				S									S	B					B
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	R	M	L	K	F	H	G	L	G	V	D	A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	N	S	A	V	F	P	G	L	Q	G	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	N	H	A	I	A	G	V	A	V	A	L	K	Q	A	M	T	P	E	F	K	E	Y	Q	R	Q	V	V	A	N	C	R	A	L	S	A	A	L	V	E	L	G	Y	K	I	V	T	G
Template Known Secondary structure								T	T	T	T			S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	S																								T	T				G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.																			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		P	A	W	P	H	V	H	A	W	H	L	F	I	I	R	V	D	E	Q	R	C	G	I	S	R	D	A	L	M	E	A	L	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	.	.	.	.	L
Query Conservation																																																																													.	.	.	.
Alig confidence							.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation							.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	D	N	H	.	.	.	.	.	.	.	L	I	L	V	D	L	R	S	K	G	T	D	G	G	R	A	E	K	V	L	E	A	C	S	I	A	C	N	K	N	T	C	P	G	D	K	S	A	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	G	L	R	L	G	T	P	A	L	T
Template Known Secondary structure		S		S	S	S	.	.	.	.	.	.	.						G	G	G	G	T													T	T									S	S		S		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		353	.	.	.	.								.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.																	.	.	400	.	.	.	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	D	M	T	T	A	D	A	D	H	V	I	T	A	L	Q	Q	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	G	L	L	E	K	D	F	Q	K	V	A	H	F	I	H	R	G	I
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions