Job Description P77690 Confidence 99.94% Date Thu Jan 5 12:31:41 GMT 2012 Rank 128 Aligned Residues 333 % Identity 13% Template c3pdxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase Resolution 2.91 Å

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		2	.	.	.	.	.			.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure								.	.						.	.	.	.	.	.																.	.	.																					.	.	.	.	.	.	.
Query SS confidence								.	.						.	.	.	.	.	.																.	.	.																					.	.	.	.	.	.	.
Query Sequence		S	E	F	L	P	F	.	.	S	R	P	A	M	.	.	.	.	.	.	G	V	E	E	L	A	A	V	K	E	V	L	E	S	G	.	.	.	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	T	G	.	.	.	.	.	.	.	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I
Query Conservation								.	.						.	.	.	.	.	.																.	.	.																					.	.	.	.	.	.	.
Alig confidence								.	.						.	.	.	.	.	.																.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	V	I	S	L	S	I	G	D	P	T	V	F	G	N	L	P	T	D	P	E	V	T	Q	A	M	K	D	A	L	D	S	G	K	Y	N	G	Y	A	P	S	I	G	Y	L	S	S	R	E	E	V	A	S	Y	Y	H	C	P	E	A	P	L	E	A	K	D	V	I	L	T	S	G	C	S	Q	A	I	E	L
Template Known Secondary structure		S						S				T	T	S	S	S	S	S																T	T		S	S	S				T	T													T			S	S	S				G	G	G					S	S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.
Predicted Secondary structure																																																.	.	.	.																										.	.	.
Query SS confidence																																																.	.	.	.																										.	.	.
Query Sequence		T	L	M	A	L	K	I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	L	M	V	.	.	.	.	T	P	E	A	I	E	S	A	I	T	P	R	T	K	A	I	I	P	V	H	Y	A	G	A	P	.	.	.	A	D
Query Conservation																																																.	.	.	.																										.	.	.
Alig confidence							.																																									.	.	.	.																										.	.	.
Template Conservation							.
Template Sequence		C	L	A	V	L	.	A	N	P	G	Q	N	I	L	I	P	R	P	G	F	S	L	Y	R	T	L	A	E	S	M	G	I	E	V	K	L	Y	N	L	L	P	E	K	S	W	E	I	D	L	K	Q	L	E	S	L	I	D	E	K	T	A	C	L	V	V	N	N	P	S	N	P	C	G	S	V	F	S	K	R	H
Template Known Secondary structure					T	T	.			S	S							S	S													T										G	G	G	T	T									T	T			S	S								S	S		T	T	T
Template Predicted Secondary structure							.
Template SS confidence
		151	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																									.	.	.	.																														.	.
Query SS confidence																									.	.	.	.																														.	.
Query Sequence		I	D	A	I	R	A	I	G	E	R	Y	G	I	A	V	I	E	D	A	A	H	A	V	.	.	.	.	G	T	Y	Y	K	G	R	H	I	G	A	K	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	.	.	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	F	H	G
Query Conservation																									.	.	.	.																														.	.
Alig confidence																									.	.	.	.																														.	.																					.	.
Template Conservation																																																																																.	.
Template Sequence		L	Q	K	I	L	A	V	A	E	R	Q	C	V	P	I	L	A	D	E	I	Y	G	D	M	V	F	S	D	C	K	Y	E	P	M	A	T	L	S	T	N	V	P	I	L	S	C	G	G	L	A	R	W	L	V	P	G	W	R	L	G	W	I	L	I	H	D	R	R	D	I	F	G	N	E	I	R	D	G	.	.
Template Known Secondary structure										T	T	T	T								T	T	T	T		B		S	S	S					G	G	G	G		S	S								B					S		G	G	G										S	S	S	S	S								.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		L	G	V	D	A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	.	.	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A	W	P	H	V	H
Query Conservation																																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.																																			.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	K	L	S	Q	R	I	L	G	P	C	T	I	V	Q	G	A	L	K	S	I	L	Q	R	T	P	Q	E	F	Y	Q	D	T	L	S	F	L	K	S	N	A	D	L	C	Y	G	A	L	S	A	I	P	G	L	Q	P	V	R	P	S	G	A	M	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T			S																																									S	T	T	B			B				B	T	T	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																																	.	.
Template SS confidence
																309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																	.	.														.
Query SS confidence																	.	.														.
Query Sequence		A	W	H	L	F	I	I	R	V	D	E	Q	R	C	G	.	.	I	S	R	D	A	L	M	E	A	L	K	E	R	.	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L	F	P	D	M	T	T	A	D
Query Conservation																	.	.														.
Alig confidence		.	.	.													.	.														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation		.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		.	.	.	Y	L	M	V	G	I	E	M	E	H	F	P	E	F	E	N	D	V	E	F	T	E	R	L	I	A	E	Q	S	V	H	C	L	P	A	T	C	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	P	N	F	F	R	V	V	I	T	.	.	V	P	E	V	M
Template Known Secondary structure		.	.	.						B		T	T	S			S		S	S																			G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			S						S		.	.	S
Template Predicted Secondary structure		.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
					373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410																						.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	H	V	I	T	A	L	Q	Q	L	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	E	A	C	S	R	I	Q	E	F	C	E	Q
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions