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Job DescriptionP77690
Confidence99.95%DateThu Jan 5 12:31:41 GMT 2012
Rank84Aligned Residues301
% Identity17%Templatec3mafB_
PDB info PDB header:lyaseChain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form)
Resolution2.97 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50. ........60.........70 .........80.........90.........100..
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Query Sequence  QALEQAFCQLTGNQHA. . . . . . IAVSSATAGMHITLMALKI. . . . . . . GKGDEVITPSLTWVSTLNMISLLGATPVMVDV
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Template Sequence  AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPL
Template Known Secondary structure  TTTTTTTS

SS

SS
TTS
TT

B
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   141........150.........160.........170.........180.........190.........200.........210.........220
 
   103... ...110.........120.........130.........140.........150........ .160.........170.
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Query Sequence  DRDT. . LMVTPEAIESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHA. . . . . . . . . VGTYYKGRHIGAK
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Template Sequence  DADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLE
Template Known Secondary structure 
TTSSB


TTTT
TTT




T
TTTTTTTTT





STTST
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   221........230.........240.........250.........260.........270.........280.........290.........300
 
   172.......180......... 190.........200.........210.........220.........230.........240.........250
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Query Sequence  GTAIFSFHAIKNITCAEG. GLIVTDNENLARQLRMLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTDINAAIALTQL
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Template Sequence  GVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSA. . . . . . . . . TAWAAMLSLGE
Template Known Secondary structure  T


TTTTT


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   301........310.........320.........330.........340.........350.........360 .........370.
 
   251........260.........270.........280.........290.........300.........310.........320.........330
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Query Sequence  VKLEHLNTRRREIAQQYQQALAALPFQPLSLPAWPHVHAWHLFIIRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQ
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Template Sequence  EGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW. . . . . . . . . . VIAVASDELNIYQVMEEMAGRGWRLNGLHR. . . . .
Template Known Secondary structure  TSTT
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SSS
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   372.......380.........390.........400...... ...410.........420.........430......
 
   331........340.........350...... ...360.........370.........
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Query Sequence  KYYRERFPTLSLPNTEWNSERICSLP. LFPDMTTADADHVITALQQLAGQ
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Template Sequence  . . . . . . . . . . . . . . . . . . . PPAFHVALTLRHTEPGVVDRFLADLQDAVAQ
Template Known Secondary structure  ...................TT

GGGSSTT
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   437..440.........450.........460.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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