Job Description P77690 Confidence 99.90% Date Thu Jan 5 12:31:41 GMT 2012 Rank 180 Aligned Residues 315 % Identity 14% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.										.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		A	A	V	K	E	V	L	E	S	G	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	T	G	.	.	.	.	.	.	.	.	.	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I	T	L	M	A	L	K	I	G	K	G	D	E	.	.	.	.	V	I	T	P	S	L	T	W	V
Query Conservation																																.	.	.	.	.	.	.	.	.																													.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.																						.							.	.	.	.
Template Conservation																																																														.
Template Sequence		E	D	A	K	K	R	A	R	R	I	L	Q	A	C	S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	.	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P
Template Known Secondary structure																		S																T	T	T					G	G	G					S	S													.					G	G	G	S								S			T
Template Predicted Secondary structure																																																														.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.									.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																									.											.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence																									.											.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		S	T	L	N	M	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	L	.	M	V	T	P	E	A	I	E	S	A	.	.	.	.	.	.	.	.	I	T	P	R	T	K	A	I	I	P	V	H	Y	A	G	A	P	A	D	I	D	.	.	.	A	I	R	A	I	G	E	R	Y	G	I	A	V	I
Query Conservation																									.											.	.	.	.	.	.	.	.																						.	.	.
Alig confidence																									.											.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L
Template Known Secondary structure										T	T									B	G	G	G	T	T	B														T	T	T	S									S	S		T	T	T																				T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.															.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Query Sequence		E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	A	I	F	S	F	H	A	I	K	N	I	T	.	.	.	C	A	E	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	F	H	G	L	G	V	D	A
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.																								.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	T	T		B			T	T													T						T	T									S	S	S	S	T	T			S	S	S									S													.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.													.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.				S															T					T	T	S	T	T																												T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.											.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	P	H	V	H	A	W	H	L	F	I	I	R	V	D	.	.	.	.	.	.	.	.	.	.	E	Q	R	C	G	I	S	R	D	A	L	M	E	A	L	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C
Query Conservation																	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.								.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	M	.	.	.	.	.	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	H	F
Template Known Secondary structure		B	S	S	.	.	.	.	.																			T	T	S																B					G	G	G	T				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B
Template Predicted Secondary structure					.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		437	.	.						440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.																			490	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	L	F	P	D	M	T	T	A	D	A	D	H	V	I	T	A	L	Q	Q	L	A	G	Q
Query Conservation
Alig confidence							.	.
Template Conservation							.	.
Template Sequence		R	M	T	I	L	.	.	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H	I	N
Template Known Secondary structure							.	.	S
Template Predicted Secondary structure							.	.
Template SS confidence
		494	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions