Job Description P77690 Confidence 99.95% Date Thu Jan 5 12:31:41 GMT 2012 Rank 93 Aligned Residues 336 % Identity 17% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		2	.	.	.	.	.			.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.								.			.	.	30	.	.	.	.	.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure								.	.																				.	.	.	.	.	.	.		.	.															.	.	.	.											.
Query SS confidence								.	.																				.	.	.	.	.	.	.		.	.															.	.	.	.											.
Query Sequence		S	E	F	L	P	F	.	.	S	R	P	A	M	G	V	E	E	L	A	A	V	K	E	V	L	E	S	.	.	.	.	.	.	.	G	.	.	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	.	.	.	.	F	C	Q	L	T	G	N	Q	H	A	.	I	A	V	S	S	A	T	A	G	M	H	I	T	L
Query Conservation								.	.																				.	.	.	.	.	.	.		.	.															.	.	.	.											.
Alig confidence								.	.																				.	.	.	.	.	.	.		.	.															.	.	.	.											.
Template Conservation
Template Sequence		R	D	T	L	E	M	I	A	S	E	N	F	V	P	R	A	V	L	Q	A	Q	G	S	V	L	T	N	K	Y	A	E	G	L	P	G	R	R	Y	Y	G	G	C	E	H	V	D	V	V	E	N	L	A	R	D	R	A	K	A	L	F	G	A	E	F	A	N	V	Q	P	H	S	G	A	Q	A	N	A	A	V	L
Template Known Secondary structure				S					T	T													T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.																																												.	.
Query SS confidence																						.	.	.	.	.																																												.	.
Query Sequence		M	A	L	K	I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	.	.	.	.	.	T	L	N	M	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	L	M	V	T	P	E	A	I	E	S	A	I	T	P	R	T	K	A	I	I	P	V	.	.	H	Y	A	G	A	P	A	D	I	D
Query Conservation																						.	.	.	.	.																																												.	.
Alig confidence					.																	.	.	.	.	.																																												.	.
Template Conservation					.
Template Sequence		H	A	L	.	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	T	H	L	I	D	M	D	A	V	R	A	T	A	L	E	F	R	P	K	V	I	I	A	G	W	S	A	Y	P	R	V	L	D	F	A
Template Known Secondary structure					.			T	T								G	G	G	T			G	G	G	T		T	T	S					S	S									T	T	T		S																S							S	S			S
Template Predicted Secondary structure					.
Template SS confidence
		104	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		A	I	R	A	I	G	E	R	Y	G	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	.	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	F	H	G	L	G	V	D	A	Y	D
Query Conservation																																			.
Alig confidence																																			.												.																														.	.	.	.	.
Template Conservation																																															.																														.	.	.	.	.
Template Sequence		A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	S	P	V	P	H	A	D	V	V	S	T	T	V	H	T	.	L	G	G	G	R	S	G	L	I	V	G	K	Q	Q	Y	A	K	A	I	N	S	A	V	F	P	G	Q	Q	G	.	.	.	.	.
Template Known Secondary structure											T								T	T	T						T	T	S	S			S	T	T	T		S									.					S								G	G	G									T	T	T	T		S	.	.	.	.	.
Template Predicted Secondary structure																																															.																														.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence		R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	.	.	.	.	A	L	P	F	Q	P	L	S	L	P	A	W	P	H	V	H	A	W	H	L	F
Query Conservation																																																									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.																.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A	R	I	I	A	D	R	L	M	A	P	D	V	A	K	A	G	V	S	V	V	S	G	G	T	D	V	H	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																	T	S																						S	S						T	T				G	G	G	S		S	S	S	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.	.	.	.
Template SS confidence
																258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.					.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		I	I	R	V	D	E	Q	R	C	G	I	S	R	D	A	L	M	E	A	L	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L	F	.	.	.	.	P	D	M	T	T	A	D	A	D	H	V
Query Conservation																																																																			.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	L	V	D	L	R	D	S	P	L	D	G	Q	A	A	E	D	L	L	H	E	V	G	I	T	V	N	R	N	A	V	P	N	D	P	R	P	P	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F	T	E	V
Template Known Secondary structure								T	T	S	S													T	T									T	T		S	S		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S													T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.																.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	A	L	Q	Q	L	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	I	I	A	T	A	L	A	T
Template Known Secondary structure											S
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions