Job Description P77690 Confidence 99.96% Date Thu Jan 5 12:31:41 GMT 2012 Rank 65 Aligned Residues 319 % Identity 16% Template c3h14A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.			.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.							.	.																																		.	.	.	.	.	.	.	.
Query SS confidence								.	.							.	.																																		.	.	.	.	.	.	.	.
Query Sequence		S	E	F	L	P	F	.	.	S	R	P	A	M	G	.	.	V	E	E	L	A	A	V	K	E	V	L	E	S	G	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	T	.	.	.	.	.	.	.	.	G	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I	T	L	M	A	L	K
Query Conservation								.	.							.	.																																		.	.	.	.	.	.	.	.
Alig confidence								.	.							.	.													.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																							.
Template Conservation																														.	.	.	.	.	.	.	.																																												.
Template Sequence		R	R	I	I	H	X	E	V	G	Q	P	G	T	G	A	P	R	G	A	V	E	A	L	A	K	S	L	E	.	.	.	.	.	.	.	.	G	L	P	A	L	R	Q	R	I	A	R	L	Y	G	E	W	Y	G	V	D	L	D	P	G	R	V	V	I	T	P	G	S	S	G	G	F	L	L	A	F	T	A	L	.
Template Known Secondary structure										S	S		S	S		S														.	.	.	.	.	.	.	.																							G	G	G					S	S													.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.																																												.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.
Predicted Secondary structure																																						.																																			.	.	.
Query SS confidence																																						.																																			.	.	.
Query Sequence		I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	.	T	L	M	V	T	P	E	A	I	E	S	A	I	T	P	R	T	K	A	I	I	P	V	H	Y	A	G	A	P	A	D	I	D	A	.	.	.	I	R	A	I	G	E
Query Conservation																																						.																																			.	.	.
Alig confidence																																						.																																			.	.	.
Template Conservation
Template Sequence		F	D	S	G	D	R	V	G	I	G	A	P	G	Y	P	S	Y	R	Q	I	L	R	A	L	G	L	V	P	V	D	L	P	T	A	P	E	N	R	L	Q	P	V	P	A	D	F	A	G	L	D	L	A	G	L	X	V	A	S	P	A	N	P	T	G	T	X	L	D	H	A	A	X	G	A	L	I	E	A	A	Q
Template Known Secondary structure				T	T								S												T	T										G	G	G	T	T	S							T	T	S			S						S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																															.	.															.	.
Query SS confidence																															.	.															.	.
Query Sequence		R	Y	G	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	G	T	A	.	.	I	F	S	F	H	A	I	K	N	I	T	C	A	E	.	.	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	F	H	G	L	G	V	D	A	Y	D	R	Q	T	W
Query Conservation																															.	.															.	.
Alig confidence																															.	.															.	.																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		A	Q	G	A	S	F	I	S	D	E	I	Y	H	G	I	E	Y	E	A	K	A	V	T	A	L	E	L	T	D	E	C	Y	V	I	N	S	F	S	K	Y	F	S	X	T	G	W	R	V	G	W	X	V	V	P	E	D	Q	V	R	V	V	E	R	I	A	Q	N	X	F	I	C	A	P	H	A	S	.	.	.	.
Template Known Secondary structure			T	T								T	T	T	T		B	S	S	S					G	G	G	T		S	S	S						S	S	S	T	T			T	T	S									G	G	G											T	T								.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A	W	P	H	V	H	A	W	H	L	F	I	I	R	V	D	E	Q	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	A	A	L	A	A	L	D	C	D	A	E	L	Q	A	N	L	D	V	Y	K	A	N	R	K	L	X	L	E	R	L	P	K	A	G	F	T	R	I	A	P	P	D	G	A	F	.	.	.	.	.	.	.	Y	V	Y	A	D	V	S	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T																											T				B					B	T	T	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template SS confidence
																				268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.								.	.	.	.	.	320	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		C	G	I	S	R	D	A	L	M	E	A	L	K	E	R	.	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L	F	P	D	M	T	T	A	D	A	D	H	V	I	T	A	L	Q	Q	L	A	G
Query Conservation																	.
Alig confidence																	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		L	T	D	D	S	R	A	F	A	A	E	I	L	E	K	A	G	V	A	V	T	P	G	L	D	F	D	P	E	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	T	L	R	F	S	Y	A	.	.	R	A	T	A	D	I	E	E	G	L	D	R	L	E	A	F	X	Q
Template Known Secondary structure		T		S																				G	G	G	T		T	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G								.	.	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.																			.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions