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Job DescriptionP77690
Confidence99.83%DateThu Jan 5 12:31:41 GMT 2012
Rank225Aligned Residues340
% Identity13%Templatec3f6tA_
PDB info PDB header:transferaseChain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40...... ...50.........60......... 70.......
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Query Sequence  VEELAAVKEVLESGWITTGPKNQALEQAFCQLT. . . . . . . . . . . . GNQHAIAVSSATAGMHITLMALK. . . . IGKGDEVI
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Template Sequence  DKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIA
Template Known Secondary structure  T
S

SSSS

TTT


GGGTTSS
TT
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   117..120.........130.........140.........150.........160.........170.........180.........190......
 
   78.80.........90.........100..... ....110.........120.........130...... ...140.......
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Query Sequence  TPSLTWVSTLNMISLLGATPVMVDVDRD. . . . . . TLMVTPEAIESAITPRTKAIIPVHYAGAPAD. . . IDAIRAIGERY.
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Template Sequence  INEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNP
Template Known Secondary structure  SS

TSGGGGGS


TTTTS
S
TTSS
TTT
B



T
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   197..200.........210.........220.........230.........240.........250.........260.........270......
 
   148.150.........160.........170. ........180..... ....190......... 200.........210..
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Query Sequence  GIAVIEDAAHAVGTYYKGRHIGAK. GTAIFSFHAIKNIT. CAEGGLIVTDNENL. . . . . . . . . . . . . ARQLRMLKFHGLG
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Template Sequence  KLXIISDEVYGAFVPNFKSIYSVVPYNTXLVYSYSLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLD
Template Known Secondary structure  T

TTGGGSTT


SGGG



S
GGG
SS
TS
TT
S
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   277..280.........290.........300.........310.........320.........330.........340.........350......
 
   213......220.........230.........240......... 250.........260.........270.........280...
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Query Sequence  VDAYDRQTWGRAPQAEVLTPGYKYNLTDINAAIALTQ. . . . . . . . . LVKLEHLNTRRREIAQQYQQALAALPFQPLSLPA
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Template Sequence  PDKXKFIDRLCADSRSIGLYHTAGLSTPQQIXEALFSXTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAXQAPKDETD
Template Known Secondary structure  GGG

TTTTTGGG
S

TT
BGGGTB
T




ST
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   358.360.........370.........380.........390.........400.........410.........420.........430.......
 
   284.....290.........300.. .......310...... ...320.........330.........340.......
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Query Sequence  WPHVHAWHLFIIRVDEQRC. . . . . . . . . . . . . . . GISRDALMEALKER. GIGTGLHFRAAHTQKYYRERFPTLSLPNTEW
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Template Sequence  TNT. . . . . HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDG. . . . . . . . . . . . . . VGFGAK. . . .
Template Known Secondary structure  TB
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TTSSS
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   438.440 .........450.........460.........470.........480........ .490....
 
   348.350.........360.........370.........
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Query Sequence  NSERICSLPLFPDMTTADADHVITALQQLAGQ
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Template Sequence  . . PGELRVSQ. ANLPTEDYALIGKQVLELLKE
Template Known Secondary structure  ..TTS.SSS
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   495....500.. .......510.........520...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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