Job Description P77690 Confidence 99.93% Date Thu Jan 5 12:31:41 GMT 2012 Rank 144 Aligned Residues 326 % Identity 16% Template c3eleB_ PDB info PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution Resolution 2.10 Å

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		2	.	.	.	.	.			.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.							.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.									.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure								.	.							.	.																.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence								.	.							.	.																.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		S	E	F	L	P	F	.	.	S	R	P	A	M	G	.	.	V	E	E	L	A	A	V	K	E	V	L	E	S	G	W	.	.	.	.	.	.	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	.	.	.	.	.	.	.	.	T	G	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I
Query Conservation								.	.							.	.																.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence								.	.							.	.																.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	V	Y	D	F	S	I	G	N	P	S	I	P	A	P	Q	I	V	N	D	T	I	K	E	L	V	T	D	Y	D	S	V	A	L	H	G	Y	T	S	A	Q	G	D	V	E	T	R	A	A	I	A	E	F	L	N	N	T	H	G	T	H	F	N	A	D	N	L	Y	X	T	X	G	A	A	A	S	L	S	I
Template Known Secondary structure		G	G											S																	S							S				T	T																							G	G	G					S	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.				.
Predicted Secondary structure																																																															.	.	.													.	.	.
Query SS confidence																																																															.	.	.													.	.	.
Query Sequence		T	L	M	A	L	K	I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	L	M	V	T	P	E	A	I	E	S	A	I	T	P	R	T	K	A	.	.	.	I	I	P	V	H	Y	A	G	A	P	A	D	.	.	.	I
Query Conservation																																																															.	.	.													.	.	.
Alig confidence																																																															.	.	.													.	.	.
Template Conservation
Template Sequence		C	F	R	A	L	T	S	D	A	Y	D	E	F	I	T	I	A	P	Y	F	P	E	Y	K	V	F	V	N	A	A	G	A	R	L	V	E	V	P	A	D	T	E	H	F	Q	I	D	F	D	A	L	E	E	R	I	N	A	H	T	R	G	V	I	I	N	S	P	N	N	P	S	G	T	V	Y	S	E	E	T	I
Template Known Secondary structure									S	T	T							S	S			T	T								T	T										T	T	T	S	S									T			T	T								S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		138	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence													.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		D	A	I	R	A	I	G	E	R	Y	G	.	.	.	.	.	.	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	G	.	.	.	.	.	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L
Query Conservation													.	.	.	.	.	.																									.	.	.	.	.
Alig confidence													.	.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		K	K	L	S	D	L	L	E	K	K	S	K	E	I	G	R	P	I	F	I	I	A	D	E	P	Y	R	E	I	V	Y	D	G	I	K	V	P	F	V	T	K	Y	Y	D	N	T	L	V	C	Y	S	Y	S	K	S	L	S	L	P	G	E	R	I	G	Y	V	L	V	P	D	E	V	Y	D	K	A	E	L	Y	A
Template Known Secondary structure																T	S									T	T	T	T		B		T	T						G	G	G	T		S	S							S	T	T	T	S	S		G	G	G									T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	H	G	L	G	V	D	A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A	W	P	H
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Sequence		A	V	C	G	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	L	G	Y	V	C	A	P	S	L	F	Q	K	X	I	V	K	C	Q	G	A	T	G	D	I	N	A	Y	K	E	N	R	D	L	L	Y	E	G	L	T	R	I	.	G	Y	H	C	F	K	P	D	G	A	F
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T				S									T	T		T	T																							.	T							S	B	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template SS confidence
		274	.	.	.	.	.																				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	A	W	H	L	F	I	I	R	V	D	E	Q	R	C	G	I	S	R	D	A	L	M	E	A	L	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L	F	P	D	M	T	T	A	D	A
Query Conservation
Alig confidence		.	.	.	.	.										.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation		.	.	.	.	.										.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		.	.	.	.	.	Y	X	F	V	K	A	L	E	D	.	.	.	.	D	S	N	A	F	C	E	K	A	K	E	E	D	V	L	I	V	A	A	D	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	C	P	G	W	V	R	I	S	Y	C	.	.	V	D	R	E	X	I
Template Known Secondary structure		.	.	.	.	.							S	S	S	.	.	.	.												T	T						G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		T	T								.	.	S
Template Predicted Secondary structure		.	.	.	.	.										.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
							334	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.																						.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.
		367	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	V	I	T	A	L	Q	Q	L	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	H	S	X	P	A	F	E	K	I	Y	K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions