Job Description P77690 Confidence 99.95% Date Thu Jan 5 12:31:41 GMT 2012 Rank 81 Aligned Residues 332 % Identity 13% Template c3cbfA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 Resolution 1.67 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.			.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.							.	.	.	.														.	.	.	.	.																								.	.
Query SS confidence								.	.							.	.	.	.														.	.	.	.	.																								.	.
Query Sequence		S	E	F	L	P	F	.	.	S	R	P	A	M	G	.	.	.	.	V	E	E	L	A	A	V	K	E	V	L	E	S	.	.	.	.	.	G	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	T	G	N	Q	.	.	H	A	I	A	V	S	S	A	T	A	G	M	H	I	T	L	M	A	L
Query Conservation								.	.							.	.	.	.														.	.	.	.	.																								.	.
Alig confidence								.	.							.	.	.	.														.	.	.	.	.																								.	.
Template Conservation
Template Sequence		P	G	I	L	S	F	A	G	G	L	P	A	P	E	L	F	P	K	E	E	A	A	E	A	A	A	R	I	L	R	E	K	G	E	V	A	L	Q	Y	S	P	T	E	G	Y	A	P	L	R	A	F	V	A	E	W	I	G	V	R	P	E	E	V	L	I	T	T	G	S	Q	Q	A	L	D	L	V	G	K	V	F
Template Known Secondary structure		T	T					S	S					G	G	G	S																					T	S				T	T														T	S		G	G	G					S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		K	I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	L	M	V	T	P	E	A	I	E	S	A	I	T	P	.	.	.	.	.	.	R	T	K	A	I	I	P	V	H	Y	A	G	A	P	A	D	I	D	A	I	R	A
Query Conservation																																																						.	.	.	.	.	.
Alig confidence		.																																																				.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	L	D	E	G	S	P	V	L	L	E	A	P	S	Y	M	G	A	I	Q	A	F	R	L	Q	G	P	R	F	L	T	V	P	A	G	E	E	G	P	D	L	D	A	L	E	E	V	L	K	R	E	R	P	R	F	L	Y	L	I	P	S	F	Q	N	P	T	G	G	L	T	P	L	P	A	R	K	R	L	L	Q
Template Known Secondary structure		.			T	T								S											T	T											T	T																	S							B	S		T	T	T			B
Template Predicted Secondary structure		.
Template SS confidence
			112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.
Query Sequence		I	G	E	R	Y	G	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	.	.	.	.	.	.	.	.	A	K	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	F	H	G	L	G	V	D
Query Conservation																													.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		M	V	M	E	R	G	L	V	V	V	E	D	D	A	Y	R	E	L	Y	F	G	E	A	R	L	P	S	L	F	E	L	A	R	E	A	G	Y	P	G	V	I	Y	L	G	S	F	S	K	V	L	S	P	G	L	R	V	A	F	A	V	A	H	P	E	A	L	Q	K	L	V	Q	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T								T	T	T	T		B		S	S														T										S	T	T	T	T		S	T	T																		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	.	.	P	F	Q	P	L	S	L	P	A	W	P	H	V	H	A	W	H	L
Query Conservation																																																														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																			.	.													.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	K	Q	G	A	D	L	H	T	P	M	L	N	Q	M	L	V	H	E	L	L	K	E	G	F	S	E	R	L	E	R	V	R	R	V	Y	R	E	K	A	Q	A	M	L	H	A	L	D	R	E	V	P	K	E	V	R	Y	T	R	P	K	G	G	M	.	.	.	.	.	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.							S	S														T	T	T																											S		T	T	S						S	B	S	S	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.
Template SS confidence
												262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.						.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	I	R	V	D	E	Q	R	C	G	I	S	R	D	A	L	M	E	A	L	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L	F	P	D	M	T	T	A	D	A	D	H	V	I	T	A
Query Conservation
Alig confidence									.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation									.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		V	W	M	E	L	P	K	.	.	.	G	L	S	A	E	G	L	F	R	R	A	L	E	E	N	V	A	F	V	P	G	G	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	N	G	G	G	E	N	T	L	R	L	S	Y	A	.	T	L	D	R	E	G	I	A	E	G	V	R	R
Template Known Secondary structure								T	.	.	.	T													T	T						S	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S			T	T							S	.	S	S
Template Predicted Secondary structure									.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		327	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.																		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.
		373	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	Q	L	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	R	A	L	K	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions