Job Description P77690 Confidence 99.86% Date Thu Jan 5 12:31:41 GMT 2012 Rank 212 Aligned Residues 336 % Identity 12% Template c2zy3A_ PDB info PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase Resolution 2.50 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.												.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence		A	A	V	K	E	V	L	E	S	G	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	.	.	.	.	.	.	.	.	.	.	.	T	G	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I	T	L	M	A	L	K	.	.	.	.	I	G	K	G	D	E	V	I	T	P	S	L	T
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		E	M	V	D	G	I	L	G	C	N	Y	P	V	P	P	R	M	L	N	I	S	E	K	I	V	R	Q	Y	I	I	R	E	M	G	A	D	A	I	P	S	E	S	V	N	L	F	A	V	E	G	G	T	A	A	M	A	Y	I	F	E	S	L	K	L	N	G	L	L	K	A	G	D	K	V	A	I	G	M	P	V
Template Known Secondary structure									T		S			S	S	T	T																	T	T		T	T	S		G	G	G							S																T	T	S	S		T	T								S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		83	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.			.	150	.
Predicted Secondary structure									.	.																		.	.	.	.																															.	.	.													.	.
Query SS confidence									.	.																		.	.	.	.																															.	.	.													.	.
Query Sequence		W	V	S	T	L	N	M	.	.	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	.	.	.	.	L	M	V	T	P	E	A	I	E	S	A	I	T	P	R	T	K	A	I	I	P	V	H	Y	A	G	A	P	A	D	.	.	.	I	D	A	I	R	A	I	G	E	R	Y	G	.	.	I	A	V
Query Conservation									.	.																		.	.	.	.																															.	.	.													.	.
Alig confidence									.	.																		.	.	.	.																															.	.	.													.	.
Template Conservation
Template Sequence		F	T	P	Y	I	E	I	P	E	L	A	Q	Y	A	L	E	E	V	A	I	N	A	D	P	S	L	N	W	Q	Y	P	D	S	E	L	D	K	L	K	D	P	A	I	K	I	F	F	C	V	N	P	S	N	P	P	S	V	K	M	D	Q	R	S	L	E	R	V	R	N	I	V	A	E	H	R	P	D	L	M	I
Template Known Secondary structure			T					S	T	T	S	T	T	T										B	G	G	G	T	S	B							G	G	G	G		T	T								S	S		S	S	S		B																	T		T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.																		.	.	210	.
Predicted Secondary structure																						.																		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.																		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	.	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	.	.	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	H	G	L
Query Conservation																						.																		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	D	D	V	Y	G	T	F	A	D	D	F	Q	S	L	F	A	I	C	P	E	N	T	L	L	V	Y	S	F	S	K	Y	F	G	A	T	G	W	R	L	G	V	V	A	A	H	Q	Q	N	V	F	D	L	A	L	D	K	L	Q	E	S	E	K	V	A	L	D	H	R	Y	R	S	L	L	P	D	V	R	S
Template Known Secondary structure						T	T	G	G	G	S	S	S									G	G	G							S	T	T	T	T	T		G	G	G									S	S									S	S												T	T	T	T		S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	D	A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A	W	P	H	V	H	A	W	H
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		L	K	F	I	D	R	L	V	A	D	S	R	A	V	A	L	N	H	T	A	G	L	S	T	P	Q	Q	V	Q	M	A	L	F	S	L	F	A	L	M	D	E	A	D	E	Y	K	H	T	L	K	Q	L	I	R	R	R	E	T	T	L	Y	R	E	L	G	M	P	P	L	R	D	E	N	A	V	.	.	.	.	.
Template Known Secondary structure												T	T	T	T	T	T	G	G	G		S	S																			T	T																			T	T	T	T	T	S						T	T	B		.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.																.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence		L	F	I	I	R	V	D	E	Q	R	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	S	R	D	A	L	M	E	A	L	K	E	R	.	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.								.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.
Template Sequence		D	Y	Y	T	L	I	D	L	Q	D	V	T	A	K	L	Y	G	E	A	F	S	E	W	A	V	K	Q	S	S	T	G	D	M	L	F	R	I	A	D	E	T	G	I	V	L	L	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	F	G	S	N	.	.	.	.	.	.	R	P	S	G	R	A
Template Known Secondary structure			S																																								S							.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S		T	T	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.															.	.	.	490	.	.							.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	F	P	D	M	T	T	A	D	A	D	H	V	I	T	A	L	Q	Q	L	A	G	Q
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		S	L	.	A	N	L	N	E	Y	E	Y	A	A	I	G	R	A	L	R	K	M	A	D	E
Template Known Secondary structure			S	.	S	S	S
Template Predicted Secondary structure				.
Template SS confidence
		499	500		.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions