Return to main results Retrieve Phyre Job Id

Job DescriptionP77690
Confidence99.86%DateThu Jan 5 12:31:41 GMT 2012
Rank211Aligned Residues308
% Identity12%Templatec2x5fB_
PDB info PDB header:transferaseChain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40...... ...50.........60.........70.........80.........90.... ..
Predicted Secondary structure 




..........
















.

Query SS confidence 


















. . . . . . . . . .















































.

Query Sequence  WITTGPKNQALEQAFCQLT. . . . . . . . . . GNQHAIAVSSATAGMHITLMALKIGKGDEVITPSLTWVSTLNMISLLG. AT
Query Conservation       
    

  

   ..........
    
   


 
    
  
    

 

                
.  
Alig confidence 


















..........





















.
























.

Template Conservation   
    
   

 
 
  
              



 
   

 
     .   

 


  
 
  
           
Template Sequence  PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLF. VNQDDTILLPEHNWGNYKLVFNTRNGAN
Template Known Secondary structure  S


TT


TT

GGGB


S.

TT
SS

TTTTT

Template Predicted Secondary structure 

















.













Template SS confidence 















































































   81........90.........100.........110.........120.........130. ........140.........150.........
 
   97..100.........110.........120 .........130...... ...140...... ...150.........160..
Predicted Secondary structure 












......















........








Query SS confidence 























. . . . . .















. . .









. . . . .















Query Sequence  PVMVDVDRDTLMVTPEAIESAITP. . . . . . RTKAIIPVHYAGAPAD. . . IDAIRAIGER. . . . . YGIAVIEDAAHAVGTY
Query Conservation                          ......           
    ...
  
   
  .....     
 
 
   
  
Alig confidence 























......















...









.....















Template Conservation 
            
   
   
          

  
 



   
 
    
             
 

 

 
     
Template Sequence  LQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFY
Template Known Secondary structure 

B
TTS
B
S

SS
SS
TTT




TT

TTTT
B
Template Predicted Secondary structure 




































Template SS confidence 















































































   160.........170.........180.........190.........200.........210.........220.........230.........
 
   163..... .170.........180........ .190.........200.........210.........220.........230
Predicted Secondary structure 





..........













..



















Query SS confidence 





. . . . . . . . . .



















. .









































Query Sequence  YKGRHI. . . . . . . . . . GAKGTAIFSFHAIKNITCAE. . GGLIVTDNENLARQLRMLKFHGLGVDAYDRQTWGRAPQAEVL
Query Conservation        ..........          
  
 
    ..

                   
                    
Alig confidence 





..........



















..
















...............









Template Conservation                       

   
 

     
 


 
             ...............          
Template Sequence  EDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVL. . . . . . . . . . . . . . . EAKVKGLIRS
Template Known Secondary structure  SS


S
TT

TTTT
GGG

B


...............T
Template Predicted Secondary structure 




















...............
Template SS confidence 















































































   240.........250.........260.........270.........280.........290.... .....300....
 
   231........240.........250.........260.........270.........280.........290.........300.........310
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  TPGYKYNLTDINAAIALTQLVKLEHLNTRRREIAQQYQQALAALPFQPLSLPAWPHVHAWHLFIIRVDEQRCGISRDALM
Query Conservation              
                           
          
                          
 
Alig confidence 





































































..







Template Conservation    
      
      
                   
       
       
       

 
      ..        
Template Sequence  NISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH. . DVDPEALR
Template Known Secondary structure  TTSS

TTT
T
GGGTTT



BSSS..SS
Template Predicted Secondary structure 

















..


Template SS confidence 















































































   305....310.........320.........330.........340.........350.........360.........370.... .....380..
 
   311.. ......320.........330.........340.........350.........360.........370.........
Predicted Secondary structure  .



























Query SS confidence 


.

































































Query Sequence  EAL. KERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTTADADHVITALQQLAGQ
Query Conservation    
.   

 
                      
         


      
 


  
   
  
   
Alig confidence 


.










.........................








.



















Template Conservation    

   

 
 
  .........................   



  .    
 
      
   
  
Template Sequence  KHLIDKYSIGVIALN. . . . . . . . . . . . . . . . . . . . . . . . . ATDIRIAFS. CVEKDDIPHVFDSIAKAIDD
Template Known Secondary structure  T




S.........................SSGG.GS
GGG
Template Predicted Secondary structure 



.........................

.



Template SS confidence 





































































   383......390....... ..400...... ...410.........420......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions