Job Description P77690 Confidence 99.95% Date Thu Jan 5 12:31:41 GMT 2012 Rank 87 Aligned Residues 341 % Identity 14% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																				.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.																				.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		F	S	R	P	A	M	G	V	E	E	L	A	A	V	K	E	V	L	E	S	G	.	.	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	T	.	.	.	.	.	.	.	.	G	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I	T	L	M	A	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.																				.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence																							.	.																				.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	A	N	T	N	M	F	T	Y	E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I	A	R	F	K	M	F	P	E	V
Template Known Secondary structure		S																					S	S		T	T	T																				T		G	G	G		S						S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
						68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.									.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.																													.	.	.																											.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																													.	.	.																											.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	L	K	I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	S	L	L	G	A	.	.	.	T	P	V	M	V	D	V	D	R	D	T	L	M	V	T	P	E	A	I	E	S	A	I	T	P	R	.	.	.	.	.	.	.	.	T	K	A	I	I	P	V	H	Y	A	G
Query Conservation		.	.	.	.																													.	.	.																											.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																													.	.	.																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K	K	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R	G	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	Q	K	G	F	V	P	F	L	V	S	A	T	A	G	T	T	V	Y	G
Template Known Secondary structure						G	G	G	S									T	T	S		T									T	T	S		G	G	G						B		T	T	S		B															T	T										B	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		A	P	A	D	I	D	A	I	R	A	I	G	E	R	Y	G	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	.	.	.	.	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	F
Query Conservation																																									.	.	.	.
Alig confidence																																									.	.	.	.
Template Conservation
Template Sequence		A	F	D	P	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A	A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N	P	H	M	M	G	V	P	L	Q	C	S	A	L	L	V	R	E	E	G	L	M	Q	N	C	N	Q	M	H	D
Template Known Secondary structure			B														T								T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S												S	S								S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	L	G	V	D	A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A	W	P	H	V	H
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	Y	D	T	G	D	K	A	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	C	G	R	H	V	D	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E	G	Y	E	M	V	F	D	G	K	P	Q	H	T
Template Known Secondary structure		G	G	G			G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S																																								T	S	T	T				S	S	S	S			S	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		435	.	.	.	.	440	.	.	.													.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.								.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360
Predicted Secondary structure																			.	.	.	.	.	.	.																																																					.
Query SS confidence																			.	.	.	.	.	.	.																																																					.
Query Sequence		A	W	H	L	F	I	I	R	V	D	E	Q	R	C	G	I	S	.	.	.	.	.	.	.	R	D	A	L	M	E	A	L	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L	.	F	P	D
Query Conservation																			.	.	.	.	.	.	.																																																					.
Alig confidence																			.	.	.	.	.	.	.																.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation																																									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	.	V	S	Y	Q	P	L	G	D	K	V	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	M	V	I	S	N	P	A
Template Known Secondary structure										T	T	T	T	T									T	T													T	S			.							T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																									.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.		.	.	.	.	.	.	.	.	550	.	.	.																				.	.	.	.	.	.	560	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	T	A	D	A	D	H	V	I	T	A	L	Q	Q	L	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	H	Q	D	I	D	F	L	I	E	E	I	E	R	L	G	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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