Job Description P77690 Confidence 99.94% Date Thu Jan 5 12:31:41 GMT 2012 Rank 122 Aligned Residues 326 % Identity 15% Template c2o1bA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.			.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.										.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure								.	.							.	.															.	.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence								.	.							.	.															.	.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		S	E	F	L	P	F	.	.	S	R	P	A	M	G	.	.	V	E	E	L	A	A	V	K	E	V	L	E	S	G	.	.	.	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	T	G	.	.	.	.	.	.	.	.	.	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I	T	L
Query Conservation								.	.							.	.															.	.	.																					.	.	.	.	.	.	.	.	.
Alig confidence								.	.							.	.															.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	L	I	N	X	A	V	G	I	P	D	G	P	T	P	Q	G	I	I	D	H	F	Q	K	A	L	T	I	P	E	N	Q	K	Y	G	A	F	H	G	K	E	A	F	K	Q	A	I	V	D	F	Y	Q	R	Q	Y	N	V	T	L	D	K	E	D	E	V	C	I	L	Y	G	T	K	N	G	L	V	A	V	P
Template Known Secondary structure		S									S		S	S														T	T						S				T	T																							T	T	T	S					S	S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.
Predicted Secondary structure																																																	.	.	.																									.	.	.
Query SS confidence																																																	.	.	.																									.	.	.
Query Sequence		M	A	L	K	I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	L	M	V	T	P	E	.	.	.	A	I	E	S	A	I	T	P	R	T	K	A	I	I	P	V	H	Y	A	G	A	P	A	D	.	.	.	I	D	A
Query Conservation																																																	.	.	.																									.	.	.
Alig confidence					.																																												.	.	.																									.	.	.
Template Conservation					.
Template Sequence		T	C	V	.	I	N	P	G	D	Y	V	L	L	P	D	P	G	Y	T	D	Y	L	A	G	V	L	L	A	D	G	K	P	V	P	L	N	L	E	P	P	H	Y	L	P	D	W	S	K	V	D	S	Q	I	I	D	K	T	K	L	I	Y	L	T	Y	P	N	N	P	T	G	S	T	A	T	K	E	V	F	D	E
Template Known Secondary structure					.			T	T								S			S	S								T	T										T	T	T					G	G	G	S															S	S		T	T	T
Template Predicted Secondary structure					.
Template SS confidence
		107	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																		.	.	.	.	.																		.	.
Query SS confidence																																		.	.	.	.	.																		.	.
Query Sequence		I	R	A	I	G	E	R	Y	G	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	.	.	.	.	.	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	.	.	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	F	H	G	L	G
Query Conservation																																		.	.	.	.	.																		.	.
Alig confidence																																		.	.	.	.	.																		.	.
Template Conservation
Template Sequence		A	I	A	K	F	K	G	T	D	T	K	I	V	H	D	F	A	Y	G	A	F	G	F	D	A	K	N	P	S	I	L	A	S	E	N	G	K	D	V	A	I	E	I	Y	S	L	S	K	G	Y	N	X	S	G	F	R	V	G	F	A	V	G	N	K	D	X	I	Q	A	L	K	K	Y	Q	T	H	T	N	A	G
Template Known Secondary structure							T	T	S	S								T	T	T	T		B	S	S	S					G	G	G	S	T	T											S	T	T	T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A	W	P	H	V	H	A	W	H	L
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template Sequence		X	F	G	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	A	A	I	Y	A	L	N	H	Y	D	D	F	L	E	E	Q	S	N	V	F	K	T	R	R	D	R	F	E	A	X	L	A	K	A	D	L	P	F	V	H	A	K	G	G	I	.	.	.	.	.	Y
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				T	T								B	S	S	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template SS confidence
		266	.	.	.	270																							.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		F	I	I	R	V	D	E	Q	R	C	G	I	S	R	D	A	L	M	E	A	L	.	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L	F	P	D	M	T	T	A	D	A	D	H	V	I	T
Query Conservation																							.
Alig confidence									.	.	.												.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation									.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		V	W	L	E	T	P	P	.	.	.	G	Y	D	S	E	Q	F	E	Q	F	L	V	Q	E	K	S	I	L	V	A	P	G	K	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	N	G	N	R	Y	V	R	I	S	L	A	.	.	L	D	D	Q	K	L	D	E	A	A	I
Template Known Secondary structure								T	.	.	.	T																					S	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T	T								.	.	S		T	T
Template Predicted Secondary structure									.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		319	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350																				.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.
		372	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Q	Q	L	A	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	T	E	L	A	Y	L
Template Known Secondary structure					G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions