Job Description P77690 Confidence 99.95% Date Thu Jan 5 12:31:41 GMT 2012 Rank 103 Aligned Residues 331 % Identity 18% Template c2o0rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis Resolution 2.00 Å

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		2	.	.	.	.	.			.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.										.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure								.	.							.	.															.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence								.	.							.	.															.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		S	E	F	L	P	F	.	.	S	R	P	A	M	G	.	.	V	E	E	L	A	A	V	K	E	V	L	E	S	G	.	.	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	T	G	.	.	.	.	.	.	.	.	.	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I	T	L	M
Query Conservation								.	.							.	.															.	.																					.	.	.	.	.	.	.	.	.
Alig confidence								.	.							.	.															.	.																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	A	V	N	L	G	Q	G	F	P	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	Q	Y	P	P	G	P	G	S	A	P	L	R	R	A	I	A	A	Q	R	R	R	H	F	G	V	D	Y	D	P	E	T	E	V	L	V	T	V	G	A	T	E	A	I	A	A	A	V	L
Template Known Secondary structure		T	T				S	S		S	S		S	S																T	T			S				T	T																							T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.
Predicted Secondary structure																																										.	.	.	.	.																															.	.	.
Query SS confidence																																										.	.	.	.	.																															.	.	.
Query Sequence		A	L	K	I	G	K	G	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	.	.	.	.	.	L	M	V	T	P	E	A	I	E	S	A	I	T	P	R	T	K	A	I	I	P	V	H	Y	A	G	A	P	A	D	.	.	.	I	D
Query Conservation																																										.	.	.	.	.																															.	.	.
Alig confidence				.																																						.	.	.	.	.																															.	.	.
Template Conservation				.
Template Sequence		G	L	.	V	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	A	L	D	A	D	A	L	R	R	A	V	T	P	R	T	R	A	L	I	I	N	S	P	H	N	P	T	G	A	V	L	S	A	T	E	L	A
Template Known Secondary structure				.			T	T								S			T	T								T	T												T	T															T	T								S	S		T	T	T
Template Predicted Secondary structure				.
Template SS confidence
		104	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.								.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence		A	I	R	A	I	G	E	R	Y	G	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	.	.	.	.	.	.	.	G	A	K	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K	F	H	G	L
Query Conservation																																.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	L	A	G	F	D	G	M	A	E	R	T	I	T	I	S	S	A	A	M	F	N	C	T	G	W	K	I	G	W	A	C	G	P	A	E	L	I	A	G	V	R	A	A	K	Q	Y	L	S	Y
Template Known Secondary structure										T	T								T	T	T	T		B		T	T						G	G	G	S	T	T	T	G	G	G											S		T	T	T																							T	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	D	A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A	W	P	H	V	H	A	W	H
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.												.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.												.	.	.	.	.
Template Sequence		V	G	G	A	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	A	V	A	L	A	L	D	T	E	D	A	W	V	A	A	L	R	N	S	L	R	A	R	R	D	R	L	A	A	G	L	T	E	I	.	G	F	A	V	H	D	S	Y	G	T	Y	.	.	.	.	.
Template Known Secondary structure					T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	T								B	S	S	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.												.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.																						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	I	I	R	V	D	E	Q	R	C	G	I	S	R	D	A	L	M	E	A	L	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L	F	P	D	M	T	T	A	D	A	D	H	V	I	T
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Sequence		F	L	C	A	D	P	R	P	L	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	F	C	D	P	A	D	V	W	N	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	F	T	F	C	.	.	K	R	D	D	T	L	D	E	A	I	R
Template Known Secondary structure								G	G	G	T																S						G	G	G	G	S						G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.																	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.
		372	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Q	Q	L	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	S	V	L	A	E
Template Known Secondary structure				G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions