Phyre 2 alignment of P77690 with c2e7uA

Job Description P77690
Confidence 99.85% Date Thu Jan 5 12:31:41 GMT 2012

Rank 214 Aligned Residues 329

% Identity 14% Template c2e7uA_

PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.					.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure							.	.	.	.							.	.	.															.	.																				.
Query SS confidence							.	.	.	.							.	.	.															.	.																				.
Query Sequence	S	E	F	L	P	F	.	.	.	.	S	R	P	A	M	G	.	.	.	V	E	E	L	A	A	V	K	E	V	L	E	S	G	.	.	W	I	T	T	G	P	K	N	Q	A	L	E	Q	A	F	C	Q	L	T	.	G	N	Q	H	A	I	A	V	S	S	A	T	A	G	M	H	I	T	L	M	A	L	K	I	G
Query Conservation							.	.	.	.							.	.	.															.	.																				.
Alig confidence							.	.	.	.							.	.	.															.	.																				.
Template Conservation
Template Sequence	N	R	Y	L	D	Y	V	M	S	W	G	P	L	I	L	G	H	A	H	P	K	V	L	A	R	V	R	E	T	L	E	R	G	L	T	F	G	A	P	S	P	L	E	V	A	L	A	K	K	V	K	R	A	Y	P	F	V	D	L	V	R	F	V	N	S	G	T	E	A	T	M	S	A	L	R	L	A	R	G	Y
Template Known Secondary structure						S	S	G	G	G	T	T		T	T		B	T														T		S			S	S																	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.

	72	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90																					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	G	.	D	E	V	I	T	P	S	L	T	W	V	S	T	L	N	M	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	L	G	A	T	P	V	M	V	D	V	D	R	D	T	L	M	V	T	P	E	A	I	E	S	A	I	T	P	R	T	K	A	I	I	P	V	H	Y
Query Conservation			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	G	R	P	Y	I	V	K	F	R	G	N	Y	H	G	H	A	D	G	L	L	V	E	A	G	S	G	A	L	T	L	G	V	P	S	S	A	G	V	P	E	E	Y	A	K	L	T	L	V	L	E	Y	N	D	P	E	G	L	R	E	V	L	K	R	R	G	E	E	I	A	A	I	I	F	E	P	V	V	G	N
Template Known Secondary structure										T	T							G	G	G	S					S	S	S			B				S	S	T	T							T	T						T	T													G	G	G								S	S	B		T
Template Predicted Secondary structure
Template SS confidence
	132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

	131	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence	A	G	A	P	A	D	I	D	.	.	.	A	I	R	A	I	G	E	R	Y	G	I	A	V	I	E	D	A	A	H	A	V	G	T	Y	Y	K	G	R	H	I	G	A	K	G	T	A	I	F	S	F	H	A	I	K	N	I	T	C	A	E	G	G	L	I	V	T	D	N	E	N	L	A	R	Q	L	R	M	L	K
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence	A	G	V	L	V	P	T	E	D	F	L	K	A	L	H	E	A	K	A	Y	G	V	L	L	I	A	D	E	V	M	T	G	F	R	L	A	F	G	G	A	T	E	L	L	G	L	K	P	D	L	V	T	L	G	K	I	L	G	G	G	L	P	A	A	A	Y	A	G	R	R	E	I	M	E	K	V	A	P	L	G
Template Known Secondary structure	T	S		B													G	G	G	G	T								T	T	T	T	T	T	S	S	T	T							T				S						G	G	G	G	T	T	S	S												T	T	B	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

	208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	H	G	L	G	V	D	A	Y	D	R	Q	T	W	G	R	A	P	Q	A	E	V	L	T	P	G	Y	K	Y	N	L	T	D	I	N	A	A	I	A	L	T	Q	L	V	K	L	E	H	L	N	T	R	R	R	E	I	A	Q	Q	Y	Q	Q	A	L	A	A	L	P	F	Q	P	L	S	L	P	A	W	P	H	V
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Sequence	P	V	Y	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	L	S	G	N	P	L	A	M	A	A	G	L	A	T	L	E	L	L	E	E	N	P	G	Y	Y	A	Y	L	E	D	L	G	A	R	L	E	A	G	L	K	E	V	L	K	E	K	G	.	.	L	P	H	T	V	N
Template Known Secondary structure	S	B				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S																			T																								T	T	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template SS confidence
	292	.	.	.	.																			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.

	288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.											.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.
Query Sequence	H	A	W	H	L	F	I	I	R	V	D	E	Q	R	C	G	I	S	.	.	.	.	.	.	.	.	.	.	R	D	A	L	M	E	A	L	K	E	R	G	I	G	T	G	L	H	F	R	A	A	H	T	Q	K	Y	Y	R	E	R	F	P	T	L	S	L	P	N	T	E	W	N	S	E	R	I	C	S	L	P	L
Query Conservation																			.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	V	G	S	M	I	T	V	F	F	T	E	G	P	V	V	T	F	Q	D	A	R	R	T	D	T	E	L	F	K	R	F	F	H	G	L	L	D	R	G	I	Y	W	P	P	S	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	A	F	L
Template Known Secondary structure			T	T						S	S	S	S				S					T	T	S														T	T	T					S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.																												400	.	.	.	.

	358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	P	D	M	T	T	A	D	A	D	H	V	I	T	A	L	Q	Q	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	V	A	H	R	E	E	D	V	E	K	T	L	E	A	L	R	K	A	L
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
	405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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