Job Description P0A6V8 Confidence 94.74% Date Thu Jan 5 11:04:01 GMT 2012 Rank 109 Aligned Residues 269 % Identity 11% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.														.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.										.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.										.
Query Sequence		M	T	K	Y	A	L	V	G	D	V	G	G	T	N	A	R	L	A	L	C	D	I	A	S	G	E	I	S	Q	A	K	T	Y	S	G	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	S	L	E	A	V	I	R	V	Y	L	E	E	H	K	V	.	.	.	E	V	K	D	G	C	I	A	I	.
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.										.
Alig confidence				.	.																		.																.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.										.
Template Conservation				.	.																		.
Template Sequence		M	L	.	.	A	L	G	I	E	G	T	A	H	T	L	G	I	G	I	V	S	.	E	D	K	V	L	A	N	V	F	D	T	L	T	T	E	K	G	G	I	H	P	K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I	A	F	S	Q	G
Template Known Secondary structure				.	.							S	S	S									.	S	S													S	S		S																										T			T	T	T
Template Predicted Secondary structure				.	.																		.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	P	I	T	G	D	W	V	A	M	T	N	H	T	W	A	F	S	I	A	E	M	K	K	N	L	G	F	S	H	L	E	I	I	N	D	F	T	A	V	S	M	A	I	P	M	L	K	K	E	H	L	I	Q	F	G	G	A	E	P	V	E	G	K	P	I	A	V	Y	G	A	G	T	G	L	G	V	A	H
Query Conservation
Alig confidence					.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	L	.	.	.	.	.	.	.	G	P	A	L	R	V	V	A	T	A	A	R	A	L	A	V	K	Y	R	K	P	I	V	G	V	N	H	C	I	A	H	V	E	I	T	K	M	F	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	P	V	G	L	Y	V	S	G	G	N	T	Q	V	L
Template Known Secondary structure		S	S		.	.	.	.	.	.	.																		T	T															G	G	G	G	G	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80								.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120															.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		L	V	H	V	D	K	R	W	V	S	L	P	G	E	G	G	H	V	D	F	A	P	N	S	E	E	E	A	I	I	L	E	I	L	R	A	E	I	G	H	V	S	A	E	R	V	L	S	G	P	G	L	V	N	L	Y	R	A	I	V	K	.	.	.	.	A	D	N	R	L	P	E	N	L	K	P	K	D	I	T
Query Conservation																																																															.	.	.	.
Alig confidence								.	.	.	.	.	.																										.	.	.	.	.	.	.																		.	.	.	.
Template Conservation								.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Sequence		A	L	E	G	G	R	.	.	.	.	.	.	Y	R	V	F	G	E	T	L	D	I	G	I	G	N	A	I	D	V	F	A	R	E	L	G	L	.	.	.	.	.	.	.	G	F	P	G	G	P	K	V	E	K	L	A	E	K	G	E	K	Y	I	E	L	P	Y	A	V	K	G	M	D	L	S	F	S	G	L	L
Template Known Secondary structure					T	T		.	.	.	.	.	.							B	S	S	S													T	T		.	.	.	.	.	.	.		S	S											T			S										T	T
Template Predicted Secondary structure								.	.	.	.	.	.																										.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.								.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		220	.	.	.								.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure						.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.
Query Sequence		E	R	A	L	.	.	.	.	.	.	.	A	D	S	C	T	D	C	R	R	A	L	S	L	F	C	V	I	M	G	R	F	G	G	N	L	A	L	N	L	G	T	F	G	G	V	F	I	A	G	G	I	V	P	R	F	L	E	F	F	K	A	S	G	F	R	A	A	F	E	D	K	G	R	F	K	E	Y	V	H
Query Conservation						.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.																																		.										.	.	.	.	.	.	.														.	.	.	.
Template Conservation																																														.										.	.	.	.	.	.	.														.	.	.	.
Template Sequence		T	E	A	I	R	K	Y	R	S	G	K	Y	R	V	E	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E	V	T	E	R	A	V	A	H	T	E	K	D	E	.	V	V	L	V	G	G	V	A	A	.	.	.	.	.	.	.	N	N	R	L	R	E	M	L	R	I	M	T	E	.	.	.	.	D	R
Template Known Secondary structure										T			S																															S		.					S	G	G	G	G	.	.	.	.	.	.	.														.	.	.	.
Template Predicted Secondary structure																																														.										.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.								.	.	.	260	.	.	.	.	.	.	.	.	.					270	.
		293	.	.	.	.	.	.	300					.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		D	I	P	V	Y	L	I	V	.	.	.	.	H	D	N	P	G	L	L	G	S	G	A	H	L	R	Q	T	L	G
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.
Template Conservation
Template Sequence		G	I	K	F	F	V	P	P	Y	D	L	C	R	D	N	G	A	M	I	A	Y	T	G	L	R	M	Y	K	A	G
Template Known Secondary structure		T								G	G	G	T	S	S		S													T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions