Job Description P0A6V8 Confidence 100.00% Date Thu Jan 5 11:04:01 GMT 2012 Rank 5 Aligned Residues 297 % Identity 17% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.																	.	.	.																						.
Query SS confidence																																				.	.	.	.	.																	.	.	.																						.
Query Sequence		Y	A	L	V	G	D	V	G	G	T	N	A	R	L	A	L	C	D	I	A	S	G	E	I	S	Q	A	K	T	Y	S	G	L	D	.	.	.	.	.	Y	P	S	L	E	A	V	I	R	V	Y	L	E	E	H	K	.	.	.	V	E	V	K	D	G	C	I	A	I	A	C	P	I	T	G	D	W	V	A	M	.
Query Conservation																																				.	.	.	.	.																	.	.	.																						.
Alig confidence																																				.	.	.	.	.																	.	.	.																						.
Template Conservation
Template Sequence		Q	F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	L	G	G	E	V	L	I	D	T	K	I	D	I	H	E	I	D	Q	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I	A	I	T	L	P	G	L	V	N	S	E	Q	G	I	V	L
Template Known Secondary structure										T	T									T	T	S														B																			T	T	T	T												S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
				75	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.							.
Query SS confidence		.	.							.
Query Sequence		.	.	T	N	H	T	W	A	.	F	S	I	A	E	M	K	K	N	L	G	F	S	H	L	E	I	I	N	D	F	T	A	V	S	M	A	I	P	M	L	K	K	E	H	L	I	Q	F	G	G	A	E	P	V	E	G	K	P	I	A	V	Y	G	A	G	T	G	L	G	V	A	H	L	V	H	V	D	K	R	W
Query Conservation		.	.							.
Alig confidence		.	.							.																														.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.
Template Sequence		Q	M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	F	V	A	N	D	T	R	A	W	A	L	A	E	K	.	.	.	.	.	.	.	.	L	F	G	H	S	Q	D	V	D	N	S	V	L	I	S	I	H	H	G	L	G	A	G	I	V	L	D	G	R	V	L	Q	G	R
Template Known Secondary structure				S	S	S	B		S	S	B												S																	.	.	.	.	.	.	.	.			S	T	T	T	T		S	S							S	S	S								T	T					T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		V	S	L	P	G	E	G	G	H	V	D	F	A	P	N	S	E	E	E	A	I	I	L	E	I	L	R	A	E	I	G	H	V	S	A	E	R	V	L	S	G	P	G	L	V	N	L	Y	R	A	I	V	K	A	D	N	R	L	P	.	.	.	.	E	N	L	K	P	K	D	I	T	E	R	A	L	A	D	S	C
Query Conservation																																																													.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.																																			.	.	.	.											.
Template Conservation																			.	.	.	.	.	.	.	.																																																	.
Template Sequence		H	G	N	I	G	E	L	G	H	I	Q	I	D	P	Q	G	K	.	.	.	.	.	.	.	.	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	.	A	A	A	D	G	D
Template Known Secondary structure		T	T		T	T	B		T	T	S	B			T	T			.	.	.	.	.	.	.	.	B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S									.				T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																																																	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.									.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		T	D	C	R	R	A	L	S	L	F	C	V	I	M	G	R	F	G	G	N	L	A	L	N	L	G	T	F	G	G	V	F	I	A	G	G	I	V	P	R	F	L	E	F	F	K	A	S	G	F	R	A	A	F	E	D	K	G	R	F	K	E	Y	V	H	D	I	P	V	Y	L	I	.	V	H	D	N	P	G	L
Query Conservation																																																																										.
Alig confidence																															.																.	.											.															.
Template Conservation																															.																.	.											.
Template Sequence		P	L	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	V	I	N	L	F	N	P	E	K	.	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y	.	.	P	S	I	E	Q	C	I	R	E	Q	.	S	L	P	V	Y	H	Q	D	L	K	L	V	E	S	R	F	Y	K	Q	A	T	M
Template Known Secondary structure																													S		.					S	G	G	G	G	G						.	.											.	S						T	T							S		S	S		T	T
Template Predicted Secondary structure																															.																.	.											.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	G	A	H	L	R	Q	T	L	G	H	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	A	A	L	I	K	Q	A	L	Y	D	G	L	L
Template Known Secondary structure													T	S
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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