|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|  |  |
|
|
|  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | P | L | I | I | K | L | G | G | V | L | L | D | S | E | . |
. |
. |
. |
. |
. |
. |
E | A | L | E | R | L | F | S | A | L | V | N | Y | R | E | S | H | Q | R | P | L | V | I | V | H | G | G | G | C | V | V | D | E | L | M | K | G | L | N | L | P | V | K | K | K | N | G | L | R | V | T | P | A | D | Q | I | D |
Query Conservation |   |
  |   |   |
|
|
|
|   |
|
|
|   |
|   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
Template Sequence |   |
Y | K | R | V | L | L | K | L | S | G | E | S | L | X | G | S | D | P | F | G | I | N | H | D | T | I | V | Q | T | V | G | E | I | A | E | V | V | K | X | G | V | Q | V | G | I | V | V | G | G | G | N | I | F | R | G | V | S | A | Q | A | G | S | X | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | A | T | A | D |
Template Known Secondary structure |   |
| S |  |  |  |  |  |  |
| G | G | G | G | G | T | T | S | S | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T | S |
| . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . |
  |
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | I | T | G | A | L | A | G | T | A | N | K | T | L | L | A | W | A | K | K | H | Q | I | A | A | V | G | L | F | L | G | D | G | D | S | V | K | V | T | Q | L | D | E | E | L | G | H | V | G | L | A | Q | P | G | S | P | K | L | I | N | S | L | L | E | N | G | Y | L | P | V | V | S | S | I | G | V | T | D | E | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |
|   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |
|
|
|
|   |
|   | . | . | . | . | . |   |
Template Sequence |   |
Y | X | G | X | X | A | T | V | X | N | A | L | A | L | K | D | A | F | E | T | L | G | I | K | A | R | V | Q | S | A | L | S | X | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | I | A | E | T | Y | A | R | P | K | A | I | Q | Y | L | E | E | G | K | V | V | I | F | A | A | G | . |
. |
. |
. |
. |
T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  | S | S |
|
| S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S | S |
|  |  |
|
|  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  | S | T | . | . | . | . | . | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
| . | . | . | . | . |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
|
|
. |
  |
  |   |
155 | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | |
. | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | L | M | N | V | N | A | D | Q | A | A | T | A | L | A | A | T | L | G | A | D | . |
L | I | L | L | S | D | V | S | G | I | L | D | G | K | G | . |
. |
. |
. |
. |
. |
Q | R | I | A | E | M | T | A | A | K | A | E | Q | L | I | E | Q | G | I | I | T | D | G | M | I | V | K | V | N | A | A | L | D | A | A | R | T |
Query Conservation |   |
  |   |   |   |   |   |
|
|   |   |
|
|   |
|
|   |   |
|   |
|   | . |
|
|
|   |
|
|
|
|
|
|   |   |   |
|
| . | . | . | . | . | . |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |
|   |   |
|
|   |   |
|
|
|
|
|
|
|   |   |
|
|   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   | . | . | . | . | . | . | . |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
Template Sequence |   |
G | N | P | F | F | T | T | D | T | A | A | A | L | R | G | A | E | X | N | C | D | V | X | L | K | A | T | N | V | D | G | V | Y | T | A | D | P | K | K | D | P | S | A | T | R | Y | E | T | I | T | F | D | E | A | L | L | . |
. |
. |
. |
. |
. |
. |
K | N | L | K | V | X | D | A | T | A | F | A | L | C | R | E | R |
Template Known Secondary structure |   |
S | S | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
| S | S | S | S |
| B | S | S |
| G | G | G |
| T | T |
|
| B |
| S |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | T | T |
|
| S | S |
|  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
139 | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . |
  |
  |   |
228 | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | G | R | P | V | D | I | A | S | W | R | H | A | E | Q | L | P | A | L | F | N | G | M | P | M | G | T | R | I |
Query Conservation |   |
|   |   |   |
|   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|
|   |
|
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
| . |   |
|   |
|   |
|
|   |   |
|   |   |
|   |   |   |   |   |
|   |   |
|
|
|   |
|
Template Sequence |   |
K | L | . |
N | I | V | V | F | G | I | A | K | E | G | S | L | K | R | V | I | T | G | E | D | E | G | T | L | V |
Template Known Secondary structure |   |
T |
| . |
|  |  |  |  |
| T | T | S | T | T |  |  |  |  |  |  |  | T |
| S |
| S |  |  |  |
Template Predicted Secondary structure |   |
|
| . |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
212 | . | |
. | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
  |