Job Description P0A6C8 Confidence 100.00% Date Thu Jan 5 11:02:50 GMT 2012 Rank 29 Aligned Residues 219 % Identity 16% Template c3ek5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium Resolution 2.56 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.								.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence		M	N	P	L	I	I	K	L	G	G	V	L	L	D	.	.	.	.	.	.	.	S	E	E	A	L	E	R	L	F	S	A	L	V	N	Y	R	E	S	H	Q	R	P	L	V	I	V	H	G	G	G	C	V	V	D	E	L	M	K	G	L	N	L	P	V	K	K	K	N	G	L	R	V	T	P	A	D	Q	I	D
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																						.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.																			.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	R	I	L	L	K	L	S	G	E	A	L	M	G	D	G	D	Y	G	I	D	P	K	V	I	N	R	L	A	H	E	V	I	E	A	Q	Q	A	G	A	Q	.	V	A	L	V	I	G	G	G	N	I	F	R	G	A	G	L	A	A	.	.	.	.	.	.	.	.	.	.	S	G	M	D	R	V	T	G	D
Template Known Secondary structure			S								G	G	G	G	G	T	T	S	S	S	S																			T	T			.							S	T	T	T	S		S	T	T	T	S		.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																												.																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.											.	.	.	.	70	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	T	G	A	L	A	G	T	A	N	K	T	L	L	A	W	A	K	K	H	Q	I	A	A	V	G	L	F	L	G	D	G	D	S	V	K	V	T	Q	L	D	E	E	L	G	H	V	G	L	A	Q	P	G	S	P	K	L	I	N	S	L	L	E	N	G	Y	L	P	V	V	S	S	I	G	V	T	D	E	G
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Sequence		H	M	G	M	L	A	T	V	I	N	A	L	A	M	Q	D	A	L	E	K	L	G	A	K	V	R	V	M	S	A	I	K	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	C	E	D	F	I	R	R	R	A	I	R	H	L	E	K	G	R	I	A	I	F	A	A	G	T	G	N	P	.	.
Template Known Secondary structure																						T	T								S	S			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S														T	T							S	T	T	S	S	T	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.															.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.							.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																							.																					.	.	.	.	.	.
Query SS confidence																							.																					.	.	.	.	.	.
Query Sequence		Q	L	M	N	V	N	A	D	Q	A	A	T	A	L	A	A	T	L	G	A	D	.	L	I	L	L	S	D	V	S	G	I	L	D	G	K	G	Q	R	I	A	E	.	.	.	.	.	.	M	T	A	A	K	A	E	Q	L	I	E	Q	G	I	I	T	D	G	M	I	V	K	V	N	A	A	L	D	A	A	R	T
Query Conservation																							.																					.	.	.	.	.	.
Alig confidence		.	.	.																			.																					.	.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation		.	.	.																																																						.	.	.	.	.	.	.
Template Sequence		.	.	.	F	F	T	T	D	S	G	A	A	L	R	A	I	E	I	G	A	D	L	L	L	K	A	T	K	V	D	G	V	Y	D	K	D	P	K	K	H	S	D	A	V	R	Y	D	S	L	T	Y	D	E	V	I	M	.	.	.	.	.	.	.	Q	G	L	E	V	M	D	T	A	A	F	A	L	A	R	D	S
Template Known Secondary structure		.	.	.	T															T		S							S	S	S	S		B	S	S		T	T	T		T	T			B		S										.	.	.	.	.	.	.	T	T			S	S											T
Template Predicted Secondary structure		.	.	.																																																						.	.	.	.	.	.	.
Template SS confidence
					139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.								.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	R	P	V	D	I	A	S	W	R	H	A	E	Q	L	P	A	L	F	N	G	M	P	M	G	T	R	I	L	A
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		D	L	.	P	L	R	I	F	G	M	S	E	P	G	V	L	L	R	I	L	H	G	A	Q	I	G	T	L	V	Q	G
Template Known Secondary structure		T		.									S	T	T							T	T				S
Template Predicted Secondary structure				.
Template SS confidence
		209	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions