Job Description P33341 Confidence 19.51% Date Thu Jan 5 11:51:41 GMT 2012 Rank 72 Aligned Residues 100 % Identity 10% Template c2yujA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 Resolution UNK

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	V	A	N	I	R	L	D	D	N	Q	P	L	P	G	Q	Y	D	I	D	I	Y	V	N	K	Q	W	R	G	K	Y	E	I	I	V	K	D	N	P	Q	E	T	C	L	S	R	E	V	I	K	R	L	G	I	N	S	D	N	F	A	S	G	K	Q	C	L	T	F	E	Q	L	V	Q	G	G	S	Y	T	W
Query Conservation
Alig confidence																																																															.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		P	S	A	L	D	Q	L	S	R	L	N	I	T	Y	P	M	L	F	K	L	T	N	K	N	S	D	R	M	T	H	C	G	V	L	E	F	V	A	D	E	G	I	C	Y	L	P	H	W	M	M	Q	N	L	L	L	E	E	G	G	L	V	.	.	.	.	Q	V	E	S	V	N	L	Q	V	A	T	Y	S	K	F
Template Known Secondary structure											T	T			S	S								T	T	T	T													B	T	T	B					S							T			T	T				.	.	.	.											S
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		119	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		D	I	G	V	F	.	R	L	D	F	S	V	P	Q	A	W	V	E	E	L	E	S	G	Y	V
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		Q	P	Q	S	P	D	F	L	D	I	T	N	P	K	A	V	L	E	N	A	L	R	N	F	A
Template Known Secondary structure				S	S						S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions