Job Description P33341 Confidence 16.42% Date Thu Jan 5 11:51:41 GMT 2012 Rank 79 Aligned Residues 100 % Identity 13% Template c1zc1A_ PDB info PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites Resolution UNK

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	V	A	N	I	R	L	D	D	N	Q	P	L	P	G	Q	Y	D	I	D	I	Y	V	N	K	Q	W	R	G	K	Y	E	I	I	V	K	D	N	P	Q	E	T	C	L	S	R	E	V	I	K	R	L	G	I	N	S	D	N	F	A	S	G	K	Q	C	L	T	F	E	Q	L	V	Q	G	G	S	Y	T	W
Query Conservation
Alig confidence																																																															.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		P	S	A	L	S	K	L	S	M	L	N	I	R	Y	P	M	L	F	K	L	T	A	N	E	T	G	R	V	T	H	G	G	V	L	E	F	I	A	E	E	G	R	V	Y	L	P	Q	W	M	M	E	T	L	G	I	Q	P	G	S	L	L	.	.	.	.	Q	I	S	S	T	D	V	P	L	G	Q	F	V	K	L
Template Known Secondary structure											T	T			S	S								T	T	T														S	S														T			T	T				.	.	.	.											S
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		119	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		D	I	G	V	F	.	R	L	D	F	S	V	P	Q	A	W	V	E	E	L	E	S	G	Y	V
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		E	P	Q	S	V	D	F	L	D	I	S	D	P	K	A	V	L	E	N	V	L	R	N	F	S
Template Known Secondary structure										T	S	S														S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions