 |
| Job Description | P33341 | | Confidence | 37.81% | Date | Thu Jan 5 11:51:41 GMT 2012 |
| Rank | 46 | Aligned Residues | 69 |
| % Identity | 17% | Template | c1nkgA_ |
| PDB info |
PDB header:lyase | Chain: A: PDB Molecule:rhamnogalacturonase b; |
PDBTitle: rhamnogalacturonan lyase from aspergillus aculeatus
|
| Resolution | 1.50 Å |
|
| | |
690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | |
. | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . |
| Predicted Secondary structure | |
 | |  |
|
|
|
| | | | |
|
|
|
|
|
|
| | | | | | |
|
|
|
|
|
|
|
|
| | |
|
|
| | | | | | |
|
|
|
| | | | | | . | | | | | | | | | | | | | | |
|
|
|
|
|
|
|
|
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
R | T | T | N | R | N | G | V | V | I | Y | D | G | M | T | P | Y | R | E | N | H | L | M | L | D | V | S | Q | S | D | S | E | A | E | L | R | G | N | R | K | I | A | A | P | Y | R | G | A | V | V | L | V | N | . |
F | D | T | D | Q | R | K | P | W | F | I | K | A | L | R | A | D | G | Q | S | L | T | F |
| Query Conservation | |
| |
|
| | |
| |
|
|
|
| |
| |
|
| | |
| |
| |
|
| | | |
|
| | | | |
| | | | | | |
| |
| | |
|
|
| | | | | . |
| | | | | | | | | | | |
| | | | |
| | |
|
| |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| |
|
| | |
| |
|
|
| | |
|
|
| . |
| |
| |
| |
| | | | | | | . | . | . | . | . | . | | | | | |
|
|
| |
|
| |
| | | | |
| | | | | | |
| | |
|
| |
|
| |
|
|
|
|
| |
|
|
| Template Sequence | |
T | Y | T | S | S | S | G | S | F | T | S | P | A | M | K | P | . |
G | T | Y | T | M | V | Y | Y | Q | G | E | Y | A | . |
. |
. |
. |
. |
. |
V | A | T | S | S | V | T | V | S | A | G | S | T | T | T | K | N | I | S | G | S | V | K | T | G | T | T | I | F | K | I | G | E | W | D | G | Q | P | T | G | F |
| Template Known Secondary structure | |
| |
|
| T | T |
| | | |
|
|
| B |
| S | . | | | | | | | | | | T | T | | | . | . | . | . | . | . | | | | | | | | |
| T | T |
| | | |
|
| | |
|
|
|
|
|
| S | | | | | | |
| S | S | S | S |
| T | T | S |
| Template Predicted Secondary structure | |
| | |
|
|
|
| | | | |
|
|
|
|
| . |
|
| | | | | | | |
|
|
| | . | . | . | . | . | . | | | | | | | | |
|
|
|
|
| | | | | | |
|
|
|
|
|
|
| | | | | | |
|
|
|
|
|
|
|
|
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
286 | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | |
. | . | . | . | . | . | . | . | 310 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
