|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | |
|
. | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | |
|
|
|
. | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
|
|
|
|
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
Query Sequence |   |
P | I | Q | V | L | P | P | Q | L | A | N | Q | I | A | A | G | E | V | V | . |
. |
E | R | P | A | S | V | V | K | E | L | V | E | N | S | L | D | A | . |
. |
. |
. |
G | A | T | R | I | D | I | D | I | E | R | G | G | A | K | L | I | R | I | R | D | N | G | C | G | I | K | K | D | E | L | A | L | . |
. |
. |
. |
. |
Query Conservation |   |
  |
|   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|
|
| . | . |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|   |
|   |
|   |
|   |   |   |
|   |   |   |
|   |
|   |
|
|
|   |
|
|   |   |   |
|
|   |   | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |
|   |   |
|   |   |   |
|   |
|
|   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |
|   |
|
|
|   |
|
|
|
|
|   |   |   |   |   |
|
|   |
|   |
|   |
|   |   |   |   | . | . |   |
|   |
|   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | I | E | V | L | T | G | L | E | P | V | R | R | R | P | G | M | Y | T | D | T | T | R | P | N | H | L | G | Q | E | V | I | D | N | S | V | D | E | A | L | A | G | H | A | K | R | V | D | V | I | L | H | A | D | Q | . |
. |
S | L | E | V | I | D | D | G | R | G | M | P | V | D | I | H | P | E | E | G | V | P | A |
Template Known Secondary structure |   |
G |
|
|
|
|
| T | T |  |  |  |  |  |
| G | G | G | T | S |
| T | T | S | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |
| T | T | S | . | . |
|  |  |  |  |  |
| S | S |
|
|
|
| S | B |
| T | T | T |
| S | B |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1009 | 1010 | . | . | . | . | . | . | . | . | . | 1020 | . | . | . | . | . | . | . | . | . | 1030 | . | . | . | . | . | . | . | . | . | 1040 | . | . | . | . | . | . | . | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . | . | . | |
|
. | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | . | . | . | . |
  |
  |   |
|
|
|
71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
|
. | . | 140 | . | . | . |
Predicted Secondary structure |   |
. | . | . |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|
|
|
|
Query SS confidence |   |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
A | L | A | R | H | A | T | S | K | I | A | S | L | D | D | L | E | A | I | I | S | L | G | F | R | G | E | A | L | A | S | I | S | S | V | S | R | L | T | L | T | S | R | T | A | E | Q | Q | E | A | W | Q | A | Y | A | E | G | R | D | M | N | V | T | V | K | P | A | . |
. |
. |
. |
A | H | P | V | G | T |
Query Conservation |   |
. | . | . |   |   |   |
|
|   |
|
|
|
|   |   |   |   |
|
|   |   |
|   |
|   |
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |
|
|
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |
|
|   |
|
|   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
Template Sequence |   |
V | E | L | I | L | C | R | L | H | A | G | G | . |
. |
K | F | S | N | K | N | Y | Q | F | S | G | G | L | H | G | V | G | I | S | V | V | N | A | L | S | K | R | V | E | V | N | V | R | R | D | G | Q | V | . |
Y | N | I | A | F | E | N | G | E | K | V | Q | D | L | Q | V | V | G | T | C | G | K | R | N | T | G | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| T | T |
| S | S | . | . |
| S | S | S | S | S |
| S | S |
| S |
|
| S | S |
|  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  | T | T |  |  | . |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T |
|
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1087 | . | . | 1090 | . | . | . | . | . | . | . | . | |
|
. | 1100 | . | . | . | . | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . | . | . | . | . | . | . | . | 1130 | . | . | . | . | . | . | |
. | . | . | 1140 | . | . | . | . | . | . | . | . | . | 1150 | . | . | . | . | . | . | . | . | . | 1160 | . | . | . |
  |
  |   |
144 | . | . | . | |
|
|
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | |
|
|
. | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  | . | . | . |  |
|
|  |  |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . | . | . |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
T | L | E | V | . |
. |
. |
L | D | L | F | Y | N | T | P | A | R | R | K | F | L | R | T | E | K | T | E | F | N | H | I | D | E | I | I | R | R | I | A | L | A | R | F | D | V | T | I | N | L | S | H | . |
. |
. |
N | G | K | I | V | R | Q | Y |
Query Conservation |   |
  |
|   |
| . | . | . |   |   |
|
|   |
|   |
|
|
|
|
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |   |
|   |   | . | . | . |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
S | V | H | F | W | P | D | E | T | F | F | D | S | P | R | F | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | S | R | L | T | H | V | L | K | A | K | A | V | L | C | P | G | V | E | I | T | F | K | D | E | I | N | N | T | E | Q | R | W | C | Y |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| G | G | G | S | S |
|
| S |
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T |
|  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1164 | . | . | . | . | . | 1170 | . | . | . | . | . | . | . | . | . | 1180 | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 1190 | . | . | . | . | . | . | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | 1210 | . | . | . | . | . |
  |