Job Description P23367 Confidence 100.00% Date Thu Jan 5 11:39:26 GMT 2012 Rank 2 Aligned Residues 295 % Identity 33% Template c3na3A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:dna mismatch repair protein mlh1; PDBTitle: mutl protein homolog 1 isoform 1 from homo sapiens Resolution 2.50 Å

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		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		M	P	.	.	I	Q	V	L	P	P	Q	L	A	N	Q	I	A	A	G	E	V	V	E	R	P	A	S	V	V	K	E	L	V	E	N	S	L	D	A	G	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	E	L	A	L	A	L	A	R	H	A	T	S
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		V	A	G	V	I	R	R	L	D	E	T	V	V	N	R	I	A	A	G	E	V	I	Q	R	P	A	N	A	I	K	E	M	I	E	N	C	L	D	A	K	S	T	S	I	Q	V	I	V	K	E	G	G	L	K	L	I	Q	I	Q	D	N	G	T	G	I	R	K	E	D	L	D	I	V	C	E	R	F	T	T	S
Template Known Secondary structure																									S															T	T		S								G	G	G	T	S								S					G	G	G	G	G	T	T	T	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	S	L	D	D	L	E	A	I	I	S	L	G	F	R	G	E	A	L	A	S	I	S	S	V	S	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		K	L	Q	.	.	.	.	.	.	.	.	.	S	F	G	F	R	G	E	A	L	A	S	I	S	H	V	A	H	V	T	I	T	T	K	T	A	D	G	K	C	A	Y	R	A	S	Y	S	D	G	K	L	K	A	P	P	K	P	C	A	G	N	Q	G	T	Q	I	T	V	E	D	L	F	Y	N	I	A	T	R	R
Template Known Secondary structure		S			.	.	.	.	.	.	.	.	.					T	T									S	S									T	T		S	S								T	T			S	S									S								S	T	T	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.										.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		K	F	L	R	T	E	K	T	E	F	N	H	I	D	E	I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	N	G	K	I	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	F	L	E	Q	A	L	A	I	E	W	Q	H	G	D	.	.	L	T	L
Query Conservation																																																																													.	.
Alig confidence																																												.																																	.	.
Template Conservation																																												.
Template Sequence		K	A	L	K	N	P	S	E	E	Y	G	K	I	L	E	V	V	G	R	Y	S	V	H	N	A	G	I	S	F	S	V	K	K	Q	G	E	T	V	A	D	V	R	.	T	L	P	N	A	S	T	V	D	N	I	R	S	I	F	G	N	A	V	S	R	E	L	I	E	I	G	C	E	D	K	T	L	A	F	K	M
Template Known Secondary structure			T	S																						T	T								T	T		S	S		S			.			T	T																	T	T									G	G	G	T
Template Predicted Secondary structure																																												.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		R	G	W	V	A	D	P	N	H	T	T	P	A	L	A	E	I	Q	Y	C	Y	V	N	G	R	M	M	R	D	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	Q	Q	P	A	F	V	L	Y	L	E	I	D	P	.	H	Q	V	D	V	N	V	H	P	A	K
Query Conservation																																																														.
Alig confidence														.	.																																															.
Template Conservation														.	.
Template Sequence		N	G	Y	I	S	N	A	N	Y	S	V	K	.	.	K	C	I	F	L	L	F	I	N	H	R	L	V	E	S	T	S	L	R	K	A	I	E	T	V	Y	A	A	Y	L	P	K	N	T	H	P	F	L	Y	L	S	L	E	I	S	I	L	E	R	V	Q	Q	H	I	E	S	K	L
Template Known Secondary structure								S	S			B	S	.	.	S								T	T						T	T											T	T	S		T	T		B												T
Template Predicted Secondary structure														.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions