Job Description P23367 Confidence 99.87% Date Thu Jan 5 11:39:26 GMT 2012 Rank 26 Aligned Residues 280 % Identity 18% Template c3lnuA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of pare subunit Resolution 2.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.			.
Query SS confidence																	.	.	.			.
Query Sequence		R	P	A	S	V	V	K	E	L	V	E	N	S	L	D	.	.	.	A	G	.	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	E	L	A	L	A	L	A	R	H	A	T	S	K	I	A	S	L	D	D	L	E	A	I	I	S	L	G	F	R	G	E
Query Conservation																	.	.	.			.
Alig confidence																	.	.	.			.													.	.															.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																																			.	.															.	.	.	.	.	.	.														.	.	.	.	.
Template Sequence		R	P	N	H	L	A	Q	E	V	I	D	N	S	V	D	E	A	L	A	G	H	A	K	Q	I	E	V	T	L	Y	K	D	G	.	.	S	C	E	V	S	D	D	G	R	G	M	P	V	D	.	.	.	.	.	.	.	I	H	P	E	E	K	I	P	G	V	E	L	I	.	.	.	.	.	L	T	R	L	G	V
Template Known Secondary structure		S	T																	T	T	S										T	T	S	.	.								S	S					S	.	.	.	.	.	.	.	B		T	T	T		S	B						.	.	.	.	.
Template Predicted Secondary structure																																			.	.															.	.	.	.	.	.	.														.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		A	L	A	S	I	S	S	V	S	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	.	.	.	.	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R	K	F	L	R	T	E	K	T	E	F	N	H	I	D	E
Query Conservation																																														.	.	.	.
Alig confidence									.										.	.																										.	.	.	.							.	.	.	.	.	.								.
Template Conservation									.										.	.																																				.	.	.	.	.	.								.
Template Sequence		S	V	V	N	A	L	S	.	T	K	V	E	L	F	I	K	R	.	.	E	G	S	E	H	R	M	E	F	R	D	G	N	A	A	S	K	L	E	V	V	G	T	V	G	K	K	N	T	G	T	R	L	R	F	.	.	.	.	.	.	W	A	D	P	K	Y	F	.	D	T	P	K	F	N	V	R	A	L	R	H
Template Known Secondary structure							T		.										.	.	T	T									T	T				S										T	T									.	.	.	.	.	.				G	G	G	S	.	S		S
Template Predicted Secondary structure									.										.	.																																				.	.	.	.	.	.								.
Template SS confidence
		161	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	N	.	G	K	I	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	F	L	E	Q	A	L	A	I	E	W	Q	H	G	D	L	T	L	R	G	W	V	A	D	P	N	H	T	T	P	A	L	A	E
Query Conservation																					.
Alig confidence																					.																							.																														.	.	.	.
Template Conservation																																												.																														.	.	.	.
Template Sequence		L	L	R	A	K	A	V	L	C	P	G	L	T	V	K	L	H	D	E	A	T	G	E	Q	D	S	W	Y	F	E	N	G	L	R	D	Y	L	K	G	E	M	A	.	E	H	E	M	L	P	A	D	L	F	V	G	S	L	K	K	D	T	E	I	V	D	W	A	A	G	W	V	P	.	.	.	.	E	G	E	L
Template Known Secondary structure										S	T	T								T	T	T									S	S	S									T	T	.	T	S															S	S											S	.	.	.	.	S	S
Template Predicted Secondary structure																																												.																														.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure															.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	Y	C	Y	V	N	G	R	M	M	R	D	.	.	.	.	.	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P	A	F	V	L	Y	L	E	I	D	P	H	Q	V	D	V	N	V	H	P	A	K	H	E	V	R	F
Query Conservation															.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		V	Q	E	S	Y	V	N	L	I	P	T	A	Q	H	G	T	H	V	N	G	L	R	S	G	L	T	D	A	L	R	E	F	C	D	F	R	N	L	L	P	R	G	V	K	L	A	P	E	D	V	W	D	R	V	T	F	V	L	S	L	K	M	T	D	P	Q	F	S	.	.	.	G	Q	T	K	E	R	L	S	S
Template Known Secondary structure								T	T				T	T		B																					T	T				T	T										T	T										S	S					.	.	.	S	T	T	S
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.	.	380	.	.
		313	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		H	Q	S	R	L	V	H	.	D	F	I	Y	Q	G	V	L	S	V	L	Q	Q	Q
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		R	Q	A	A	G	F	I	E	G	A	A	H	D	A	F	S	L	Y	L	N	Q	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions