Job Description P23367 Confidence 100.00% Date Thu Jan 5 11:39:26 GMT 2012 Rank 1 Aligned Residues 323 % Identity 24% Template c3h4lB_ PDB info PDB header:dna binding protein, protein binding Chain: B: PDB Molecule:dna mismatch repair protein pms1; PDBTitle: crystal structure of n terminal domain of a dna repair protein Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	P	P	Q	L	A	N	Q	I	A	A	G	E	V	V	E	R	P	A	S	V	V	K	E	L	V	E	N	S	L	D	A	G	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	E	L	A	L	A	L	A	R	H	A	T	S	K	I	A	S	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	N	D	I	D	V	H	R	I	T	S	G	Q	V	I	T	D	L	T	T	A	V	K	E	L	V	D	N	S	I	D	A	N	A	N	Q	I	E	I	I	F	K	D	Y	G	L	E	S	I	E	C	S	D	N	G	D	G	I	D	P	S	N	Y	E	F	L	A	L	K	H	Y	T	S	K	I	A	K	F	Q
Template Known Secondary structure																			S															T	T		S								G	G	G	T	S								S					T	T	T	G	G	G	S	S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		D	L	E	A	I	I	S	L	G	F	R	G	E	A	L	A	S	I	S	S	V	S	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R	K	.	F	L	R	T
Query Conservation																																																																													.
Alig confidence																																																.																													.
Template Conservation																																																.
Template Sequence		D	V	A	K	V	Q	T	L	G	F	R	G	E	A	L	S	S	L	C	G	I	A	K	L	S	V	I	T	T	T	S	P	P	K	A	D	K	L	E	Y	D	M	V	G	H	I	.	T	S	K	T	T	T	S	R	N	K	G	T	T	V	L	V	S	Q	L	F	H	N	L	P	V	R	Q	K	E	F	S	K	T
Template Known Secondary structure							T	T	S	S			S	S								S	S								S	S	T	T									T	T	S			.									S	S								S	T	T	T	T										T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	T	E	F	N	H	I	D	E	I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	N	G	K	.	.	I	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	F	L	E	Q	A	L	A	I	E	W	Q	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	K	R	Q	F	T	K	C	L	T	V	I	Q	G	Y	A	I	I	N	A	A	I	K	F	S	V	W	N	I	T	P	K	G	K	K	N	L	I	L	S	T	M	R	N	S	S	M	R	K	N	I	S	S	V	F	G	A	G	G	M	R	G	L	E	E	V	D	L	V	L	D	L	N	P	F	K	N	R	M	L
Template Known Secondary structure																					T	T	S									T	T	S										T	T												T	G	G	G	T	T	T											G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
					231	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure		.	.	.															.
Query SS confidence		.	.	.															.
Query Sequence		.	.	.	H	G	D	L	T	L	R	G	W	V	A	D	P	N	.	H	T	T	P	A	L	A	E	I	Q	Y	C	Y	V	N	G	R	M	M	R	D	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	Q	Q	P	A	F	V	L	Y	L	E	I	D	P	H	Q	V	D	V	N	V	H	P	A
Query Conservation		.	.	.															.
Alig confidence		.	.	.															.																																			.																						.	.	.	.
Template Conservation																																																						.																						.	.	.	.
Template Sequence		L	D	L	D	Y	K	I	R	V	K	G	Y	I	S	Q	N	S	F	G	C	G	R	N	S	K	D	R	Q	F	I	Y	V	N	K	R	P	V	E	Y	S	T	L	L	K	C	C	N	E	V	Y	K	T	.	F	N	N	V	Q	F	P	A	V	F	L	N	L	E	L	P	M	S	L	I	D	.	.	.	.	P	D
Template Known Secondary structure																	S	S	T	T	S	S	B	S	S	T	T	S						S	S	S	B																T	.	T		T	T		B											G	G	G	B		.	.	.	.
Template Predicted Secondary structure																																																						.																						.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	E	V	R	F	H	Q	S	R	L	V	H	D	F	I	Y	Q	G	V	L	S	V	L	Q	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	V	I	L	L	H	N	E	R	A	V	I	D	I	F	K	T	T	L	S	D	Y	Y	N	R	Q
Template Known Secondary structure		S					B	T	T
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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