Job Description P23367 Confidence 99.06% Date Thu Jan 5 11:39:26 GMT 2012 Rank 45 Aligned Residues 258 % Identity 10% Template c3cwvB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase, b subunit, truncated; PDBTitle: crystal structure of b-subunit of the dna gyrase from myxococcus2 xanthus Resolution 1.95 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		P	A	S	V	V	K	E	L	V	E	N	S	L	D	A	.	.	.	.	G	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	E	L	A	L	A	L	A	R	H	A	T	S	K	I	A	S	L	D	D	L	E	A	I	I	S	L	G	F	R	G	E	A
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.															.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	H	L	V	Y	F	L	L	D	V	A	Y	E	E	A	R	R	G	E	C	R	D	V	V	L	E	V	G	G	D	G	S	.	.	I	A	L	F	C	T	S	S	M	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			T	T											T	T	S		.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	S	I	S	S	V	S	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R	K	F	L	R	T	E	K	T	E	F	N	H	I	D	E	I	I	R	R	I
Query Conservation
Alig confidence		.														.	.																																	.	.	.	.								.	.	.
Template Conservation		.														.	.																																	.	.	.	.								.	.	.
Template Sequence		.	V	S	L	A	L	S	S	R	Y	Q	V	D	I	.	.	W	D	G	R	Q	W	R	V	M	G	E	H	G	H	P	Q	G	M	E	P	M	P	V	S	A	E	R	G	V	R	V	H	.	.	.	.	F	V	P	D	A	T	I	.	.	.	F	E	V	L	A	F	D	R	A	R	L	S	R	R	C	N	E	L
Template Known Secondary structure		.					T									.	.				S								T	T									S	S			S	S						.	.	.	.					T	T	T	.	.	.		S
Template Predicted Secondary structure		.														.	.																																	.	.	.	.								.	.	.
Template SS confidence
			103	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		A	L	A	R	F	D	V	T	I	N	L	S	H	N	.	G	K	I	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	F	L	E	Q	A	L	A	I	E	W	Q	H	G	D	L	T	L	R	G	W	V	A	D	P	N	H	T	T	P	A	L	A	E	I	Q	Y	C	Y
Query Conservation																.
Alig confidence																.																							.																														.	.	.	.
Template Conservation																																							.																														.	.	.	.
Template Sequence		A	A	L	A	P	G	L	R	V	S	F	A	D	L	Q	R	G	E	R	T	L	W	H	L	P	G	G	V	A	Q	W	A	H	V	L	T	E	.	A	R	P	Q	L	H	P	E	P	V	V	F	D	F	T	W	D	G	L	R	V	Q	C	A	L	Q	W	C	E	.	.	.	.	D	E	D	S	T	L	L	S	F
Template Known Secondary structure					S	T	T								T	T	T	T								T	T											T	.	T	S		B	S	S	S	S									T	T										B	S	.	.	.	.	S	S
Template Predicted Secondary structure																																							.																														.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.
		258	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.											.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		V	N	G	R	M	M	R	D	.	.	.	.	.	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	.	.	.	.	.	.	.	.	.	.	Q	Q	P	A	F	V	L	Y	L	E	I	D	P	H	Q	.	.	V	D	V	N	V	H	P	A	K	H	E	V	R	F	H	Q	S	R	L	V	H	D
Query Conservation										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																.	.			.	.	.							.	.	.
Template Conservation																																																														.	.	.							.	.	.
Template Sequence		A	N	A	V	R	T	V	R	H	G	A	H	V	K	G	V	T	Q	A	L	R	G	A	L	A	K	L	S	G	E	T	R	G	A	F	P	W	A	R	V	A	Q	G	L	T	A	I	V	A	V	S	G	P	R	R	Q	M	A	F	A	.	.	.	G	P	T	K	E	L	.	.	.	L	A	I	P	G	L	E	E
Template Known Secondary structure			T	T				T	T		B																			T			G	G	G	S						T	T	T											G	G	G			B	S	.	.	.	S	S	S	T	T	S	.	.	.	B			T	T
Template Predicted Secondary structure																																																														.	.	.							.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.				.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	Y	Q	G	V	L	S	V	L	Q	Q	Q	L	E	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	R	K	Q	L	Q	P	L	F	I	E	L	L	R	E	H
Template Known Secondary structure																T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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