Job Description P23367 Confidence 99.93% Date Thu Jan 5 11:39:26 GMT 2012 Rank 24 Aligned Residues 166 % Identity 25% Template c2q2eB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.														.	.
Query SS confidence																					.	.	.	.	.														.	.
Query Sequence		R	P	A	S	V	V	K	E	L	V	E	N	S	L	D	A	G	A	T	.	.	.	.	.	R	I	D	I	D	I	E	R	G	G	A	K	L	.	.	I	R	I	R	D	N	G	C	G	I	K	K	D	E	L	A	L	A	L	A	R	H	A	T	S	K	I	A	S	L	D	D	L	E	A	I	I	S	L	G	F
Query Conservation																					.	.	.	.	.														.	.
Alig confidence																					.	.	.	.	.														.	.																											.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		S	L	I	T	T	V	K	E	A	V	D	N	A	L	D	A	C	E	E	A	G	I	L	P	D	I	L	V	Q	V	E	R	T	G	P	D	Y	V	T	V	I	I	E	D	N	G	P	G	I	V	R	E	Q	I	P	K	V	F	A	K	L	L	Y	G	F	.	.	.	.	.	.	.	H	A	L	K	S	R	G	Q
Template Known Secondary structure																			T	T	T	S		S											T	T	T										S					G	G	G						S							.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.								.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure														.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		R	G	E	A	L	A	S	I	S	S	V	S	.	.	.	.	.	.	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	.	.	.	.	.	.	.	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R	K	F	L
Query Conservation														.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																				.	.	.	.	.	.	.																																				.
Template Conservation																																																																																	.
Template Sequence		Q	G	I	G	I	S	A	A	V	L	Y	A	Q	M	T	A	G	R	H	T	K	I	L	S	K	T	S	P	T	A	P	A	H	Y	Y	E	L	M	I	N	T	S	T	N	E	P	D	I	L	V	D	E	V	R	D	W	F	R	P	H	G	T	Q	I	E	L	E	M	R	A	A	Y	V	K	G	R	R	Q	S	.
Template Known Secondary structure		S	S														T											S	S	S	S											S	S	S		S												S		S	S									S							S	S	S	S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		R	T	E	K	T	E	F	N	H	I	D	E	I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	.	N	G	K	I	V	R	Q	Y	R	A	V	P	E
Query Conservation																																.
Alig confidence		.	.	.	.	.	.	.	.	.																						.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	I	Y	E	Y	L	K	A	T	A	I	V	N	P	H	A	R	I	T	L	I	D	P	D	G	N	E	E	V	F	E	R	A	T	D	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	S													S								T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions