Job Description P23367 Confidence 99.45% Date Thu Jan 5 11:39:26 GMT 2012 Rank 43 Aligned Residues 165 % Identity 22% Template c1zxnB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp Resolution 2.51 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																					.	.	.			.	.																													.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.			.	.																													.	.	.	.	.	.	.	.
Query Sequence		E	V	V	E	R	P	A	S	V	V	K	E	L	V	E	N	S	L	D	.	.	.	A	G	.	.	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	.	.	.	.	.	.	.	.	E	L	A	L	A	L	A	R	H	A	T	S	K	I	A	S	L	D
Query Conservation																					.	.	.			.	.																													.	.	.	.	.	.	.	.
Alig confidence																					.	.	.			.	.														.															.	.	.	.	.	.	.	.													.	.
Template Conservation																																									.																																			.	.
Template Sequence		T	F	V	P	G	L	Y	K	I	F	D	E	I	L	V	N	A	A	D	N	K	Q	R	D	P	K	M	S	C	I	R	V	T	I	D	P	E	N	N	.	L	I	S	I	W	N	N	G	K	G	I	P	V	V	E	H	K	V	E	K	M	Y	V	P	A	L	I	F	G	Q	L	L	T	S	.	.	S	N	Y	D
Template Known Secondary structure																					G	G	G	T		T	T										T	T	T	T	.								S	S					S			T	T	T	T										S	S	S			.	.	S
Template Predicted Secondary structure																																									.																																			.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																									.																											.	.	.
Query SS confidence																									.																											.	.	.
Query Sequence		D	L	E	A	I	I	S	L	G	F	R	G	E	A	L	A	S	I	S	S	V	S	R	.	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	.	.	.	V	K	P	A	A	H	P	V	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R	K	F
Query Conservation																									.																											.	.	.
Alig confidence																									.																											.	.	.														.	.	.	.
Template Conservation																																																																				.	.	.	.
Template Sequence		D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F	S	T	K	F	T	V	E	T	A	S	R	E	Y	K	K	M	F	K	Q	T	W	M	D	N	M	G	R	A	G	E	M	E	L	K	P	F	N	G	E	D	Y	T	C	I	T	.	.	.	.	F	Q	P	D	L	S	K	F	K	M
Template Known Secondary structure		G	G	G					S			S	S									T											G	G	G	T									T	T	T	T												S	S							.	.	.	.					G	G	G	G	T
Template Predicted Secondary structure																																																																				.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	T	E	K	T	E	F	N	H	I	D	E	I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	L	D	K	D	I	V	A	L	M	V	R	R	A	Y	D	I	A	G	S	T	K	D	V	K	V	F	L
Template Known Secondary structure		S	S																				S	S	S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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