Job Description P23367 Confidence 100.00% Date Thu Jan 5 11:39:26 GMT 2012 Rank 10 Aligned Residues 302 % Identity 16% Template c1s16B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of e. coli topoisomerase iv pare 43kda subunit2 complexed with adpnp Resolution 2.10 Å

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		19	20	.	.	.	.										.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.									.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.														.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.														.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		V	V	E	R	P	A	.	.	.	.	.	.	.	.	.	S	V	V	K	E	L	V	E	N	S	L	D	A	.	.	.	.	G	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	E	.	.	.	.	.	.	.	.	L	A	L	A	L	A	R	H	A	T
Query Conservation								.	.	.	.	.	.	.	.	.														.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.														.	.	.	.														.	.																.	.	.	.	.	.	.	.
Template Conservation																																															.	.
Template Sequence		V	R	R	R	P	G	M	Y	T	D	T	T	R	P	N	H	L	G	Q	E	V	I	D	N	S	V	D	E	A	L	A	G	H	A	K	R	V	D	V	I	L	H	A	D	Q	.	.	S	L	E	V	I	D	D	G	R	G	M	P	V	D	I	H	P	E	E	G	V	P	A	V	E	L	I	L	C	R	L	H	A
Template Known Secondary structure						G	G	G	T	S		T	T	S	T																	T	T			S								T	T	S	.	.								S	S					S	B		T	T	T		S	B									T	T
Template Predicted Secondary structure																																															.	.
Template SS confidence
		2019	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.			.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	I	A	S	L	D	D	L	E	A	I	I	S	L	G	F	R	G	E	A	L	A	S	I	S	S	V	S	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R
Query Conservation
Alig confidence				.	.																																							.																																	.	.
Template Conservation				.	.																																							.																																	.	.
Template Sequence		G	G	.	.	K	F	S	N	K	N	Y	Q	F	S	G	G	L	H	G	V	G	I	S	V	V	N	A	L	S	K	R	V	E	V	N	V	R	R	D	G	Q	V	.	Y	N	I	A	F	E	N	G	E	K	V	Q	D	L	Q	V	V	G	T	C	G	K	R	N	T	G	T	S	V	H	F	W	.	.	P	D	E
Template Known Secondary structure		S	S	.	.		S	S	S	S	S		S	S		S			S	S									T											T	T			.							T	T														T	T										.	.			G
Template Predicted Secondary structure				.	.																																							.																																	.	.
Template SS confidence
		2097	.			.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.		.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.			.	2170	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	F	L	R	T	E	K	T	E	F	N	H	I	D	E	I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	N	G	K	I	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	F	L	E	Q	A	L	A	I	E	W	Q	H	G	D	L	T	L	R
Query Conservation
Alig confidence					.																																													.	.
Template Conservation					.																																													.	.
Template Sequence		T	F	F	.	D	S	P	R	F	S	V	S	R	L	T	H	V	L	K	A	K	A	V	L	C	P	G	V	E	I	T	F	K	D	E	I	N	N	T	E	Q	R	W	C	Y	Q	D	G	.	.	L	N	D	Y	L	A	E	A	V	N	G	L	P	T	L	P	E	K	P	F	I	G	N	F	A	G	D	T	E	A
Template Known Secondary structure		G	G	S	.	S			S																	S	T	T								T	T	T	T								S	S		.	.									T	T	T	S															S	S
Template Predicted Secondary structure					.																																													.	.
Template SS confidence
		2172	.	.		.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.			.	2220	.	.	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.					300	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.																																			.	.	.	.
Query SS confidence																														.	.	.	.	.																																			.	.	.	.
Query Sequence		G	W	V	A	D	P	N	H	T	T	P	A	L	A	E	I	Q	Y	C	Y	V	N	G	R	M	M	R	D	.	.	.	.	.	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	Q	Q	P	A	F	V	L	Y	L	E	I	D	P	H	Q	V	.	.	.	.	D	V	N	V	H	P	A	K	H
Query Conservation																														.	.	.	.	.																																			.	.	.	.
Alig confidence																	.													.	.	.	.	.																								.	.										.	.	.	.
Template Conservation																	.																																									.	.
Template Sequence		V	D	W	A	L	L	W	L	P	E	G	G	E	L	L	.	T	E	S	Y	V	N	L	I	P	T	M	Q	G	G	T	H	V	N	G	L	R	Q	G	L	L	D	A	M	R	E	F	C	E	Y	R	N	I	L	P	R	.	.	G	V	K	L	S	A	E	D	I	W	D	R	C	A	Y	V	L	S	V	K	M	Q
Template Known Secondary structure										T	T						.						T	T				T	T		B																					T	T				T	.	.	T										T	T										S
Template Predicted Secondary structure																	.																																									.	.
Template SS confidence
		2249	2250	.	.	.	.	.	.	.	.	.	2260	.	.	.		.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.			.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.
		309	310	.	.	.	.												.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	R	F	H	Q	.	.	.	.	.	.	.	.	.	.	.	S	R	L	V	H	D	F	I	Y	Q	G	V	L	S	V	L	Q	Q	Q
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	Q	F	A	G	Q	T	K	E	R	L	S	S	R	Q	C	A	A	F	V	S	G	V	V	K	D	A	F	I	L	W	L	N	Q	N
Template Known Secondary structure		S			B	S	S	T	T				B			T	T
Template Predicted Secondary structure
Template SS confidence
		2326	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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