Job Description P23367 Confidence 99.28% Date Thu Jan 5 11:39:26 GMT 2012 Rank 44 Aligned Residues 252 % Identity 17% Template c1qzrA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase ii; PDBTitle: crystal structure of the atpase region of saccharomyces cerevisiae2 topoisomerase ii bound to icrf-187 (dexrazoxane) Resolution 1.90 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.			.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																					.	.	.			.	.											.																			.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.			.	.											.																			.	.	.	.	.	.	.	.
Query Sequence		E	V	V	E	R	P	A	S	V	V	K	E	L	V	E	N	S	L	D	.	.	.	A	G	.	.	A	T	R	I	D	I	D	I	E	R	.	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	.	.	.	.	.	.	.	.	E	L	A	L	A	L	A	R	H	A	T	S	K	I	A	S	L
Query Conservation																					.	.	.			.	.											.																			.	.	.	.	.	.	.	.
Alig confidence																					.	.	.			.	.											.				.	.														.	.	.	.	.	.	.	.													.	.
Template Conservation																																										.	.																																		.	.
Template Sequence		T	I	V	P	G	L	F	K	I	F	D	E	I	L	V	N	A	A	D	N	K	V	R	D	P	S	M	K	R	I	D	V	N	I	H	A	E	E	H	T	.	.	I	E	V	K	N	D	G	K	G	I	P	I	E	I	H	N	K	E	N	I	Y	I	P	E	M	I	F	G	H	L	L	T	S	.	.	S	N	Y
Template Known Secondary structure																										T	T										T	T	T	T		.	.							S	S					S	B		T	T	T		S	B								S	S	S			.	.	S
Template Predicted Secondary structure																																										.	.																																		.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.																																.	.	.	.
Query SS confidence																										.																																.	.	.	.
Query Sequence		D	D	L	E	A	I	I	S	L	G	F	R	G	E	A	L	A	S	I	S	S	V	S	R	.	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	.	.	.	.	H	P	V	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R
Query Conservation																										.																																.	.	.	.
Alig confidence																										.																																.	.	.	.									.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		D	D	D	E	K	K	V	T	G	G	R	N	G	Y	G	A	K	L	C	N	I	F	S	T	E	F	I	L	E	T	A	D	L	N	V	G	Q	K	Y	V	Q	K	W	E	N	N	M	S	I	C	H	P	P	K	I	T	S	Y	K	K	G	P	S	Y	T	K	V	T	.	.	.	.	F	K	P	D	L	T	R	F
Template Known Secondary structure			T	T	S					S			S	S									T											T	T	T	T									T	T	T	T												S	S								.	.	.	.					G	G	G	G
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	L	R	T	E	K	T	E	F	N	H	I	D	E	I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	N	G	K	I	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	F	L	E	Q	A	L	A	I	E	W	Q	H	G	D	L	T	L	R	G
Query Conservation
Alig confidence																																	.	.								.	.	.	.	.	.	.	.																					.
Template Conservation																																	.	.								.	.	.	.	.	.	.	.																					.
Template Sequence		G	M	K	E	L	D	N	D	I	L	G	V	M	R	R	R	V	Y	D	I	N	G	S	V	R	D	I	N	V	Y	L	.	.	N	G	K	S	L	K	I	.	.	.	.	.	.	.	.	R	N	F	K	N	Y	V	E	L	Y	L	K	S	L	I	P	T	I	L	Y	.	E	R	I	N	N	R	W	E	V	A	F
Template Known Secondary structure		T		S	S																				S	T	T						.	.	T	T						.	.	.	.	.	.	.	.		S							T	T	T	T	T				S				.					T	T
Template Predicted Secondary structure																																	.	.								.	.	.	.	.	.	.	.																					.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.									.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.							.	.	.	290	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																						.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.																						.	.	.	.	.	.
Query Sequence		W	V	A	D	P	N	H	T	T	P	A	L	A	E	I	Q	Y	C	Y	V	N	G	R	M	M	R	D	.	.	.	.	.	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	Q	Q	P	.	.	.	.	.	.	A	F	V	L	Y	L	E	I	D
Query Conservation																													.	.	.	.	.																						.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																		.	.	.	.	.																						.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.
Template Sequence		A	V	S	.	.	.	.	.	.	.	D	I	S	F	Q	Q	I	S	F	V	N	S	I	A	T	T	M	G	G	T	H	V	N	Y	I	T	D	Q	I	V	K	K	I	S	E	I	L	K	K	V	K	S	F	Q	I	K	N	N	M	F	I	F	I	N	C	L	I	E
Template Known Secondary structure					.	.	.	.	.	.	.	S	S	S								T	T				T	T		B																												T	T										S
Template Predicted Secondary structure					.	.	.	.	.	.	.
Template SS confidence
		293	.	.								.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions