Job Description P23367 Confidence 100.00% Date Thu Jan 5 11:39:26 GMT 2012 Rank 7 Aligned Residues 311 % Identity 16% Template c1kijB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: crystal structure of the 43k atpase domain of thermus thermophilus2 gyrase b in complex with novobiocin Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.																.	.	.	.																																	.	.	.
Query SS confidence																							.	.	.	.	.																.	.	.	.																																	.	.	.
Query Sequence		P	I	Q	V	L	P	P	Q	L	A	N	Q	I	A	A	G	E	V	V	E	R	.	.	.	.	.	P	A	S	V	V	K	E	L	V	E	N	S	L	D	A	.	.	.	.	G	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	E	L	A	.	.	.
Query Conservation																							.	.	.	.	.																.	.	.	.																																	.	.	.
Alig confidence																							.	.	.	.	.																.	.	.	.															.	.																	.	.	.
Template Conservation																																																													.	.
Template Sequence		A	I	R	V	L	K	G	L	E	G	V	R	H	R	P	A	M	Y	I	G	G	T	G	V	E	G	Y	H	H	L	F	K	E	I	L	D	N	A	V	D	E	A	L	A	G	Y	A	T	E	I	L	V	R	L	N	E	D	G	S	.	.	L	T	V	E	D	N	G	R	G	I	P	V	D	L	M	P	E	E	G
Template Known Secondary structure								T	T							T					S		S	S																					T	T	S										T	T	S		.	.						S	S						S			T	T	T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.
Predicted Secondary structure		.	.	.																																																																									.	.	.	.
Query SS confidence		.	.	.																																																																									.	.	.	.
Query Sequence		.	.	.	L	A	L	A	R	H	A	T	S	K	I	A	S	L	D	D	L	E	A	I	I	S	L	G	F	R	G	E	A	L	A	S	I	S	S	V	S	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	.	.	.	.	G
Query Conservation		.	.	.																																																																									.	.	.	.
Alig confidence		.	.	.																																																	.																								.	.	.	.
Template Conservation																																																					.
Template Sequence		K	P	A	V	E	V	I	Y	N	T	L	H	S	G	G	K	F	E	Q	G	A	Y	K	V	S	G	G	L	H	G	V	G	A	S	V	V	N	A	L	S	E	W	T	V	V	E	V	F	R	E	G	.	K	H	H	R	I	A	F	S	R	G	E	V	T	E	P	L	R	V	V	G	E	A	P	R	G	K	T	G
Template Known Secondary structure											S	S				S	G	G	G	S	S	S					S		S	S	T	T	S							T											T	T	.									T	T														S	S
Template Predicted Secondary structure																																																					.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R	K	F	L	R	T	E	K	T	E	F	N	H	I	D	E	I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	N	G	K	I	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	.	.	F
Query Conservation																																																																															.	.
Alig confidence								.	.	.	.	.	.							.																																							.	.																			.	.
Template Conservation								.	.	.	.	.	.							.																																							.	.
Template Sequence		T	R	V	T	F	K	.	.	.	.	.	.	P	D	P	E	I	F	.	G	N	L	R	F	D	P	S	K	I	R	A	R	L	R	E	V	A	Y	L	V	A	G	L	K	L	V	F	Q	D	R	Q	H	G	K	E	E	V	.	.	F	L	D	K	G	G	V	A	S	F	A	K	A	L	A	E	G	E	D	L	L
Template Known Secondary structure								.	.	.	.	.	.							.	T	T																			T	T	T								T	T	T	T					.	.				T	T										T	T	T	S		B	S
Template Predicted Secondary structure								.	.	.	.	.	.							.																																							.	.
Template SS confidence
		166	.	.	.	170	.							.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.											.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	Q	A	L	A	I	E	W	Q	H	G	D	L	T	L	R	G	W	V	A	D	P	N	H	T	T	P	A	L	A	E	I	Q	Y	C	Y	V	N	G	R	M	.	.	.	.	.	.	.	.	.	.	M	R	D	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	Q	Q	P	A	F	V	L
Query Conservation																																												.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.
Template Sequence		Y	E	K	P	F	L	I	R	G	T	H	G	E	V	E	V	E	V	G	F	L	H	T	Q	.	.	.	.	G	Y	N	A	E	I	L	T	Y	A	N	M	I	P	T	R	D	G	G	T	H	L	T	A	F	K	S	A	Y	S	R	A	L	N	Q	Y	A	K	K	A	G	L	N	K	E	K	G	P	Q	P	T	G
Template Known Secondary structure		S	S	S									T	T										B	S	.	.	.	.	S	S									T	T				T	T		B																						T			S	T	T					S	S
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.									.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.				.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.				.	.	.	.	.
Query Sequence		Y	L	E	I	D	P	H	Q	V	D	V	N	V	H	.	.	.	.	.	.	.	.	P	A	K	.	.	.	.	.	H	E	V	R	F	H	Q	S	R	L	V	H	D	F	I	Y	Q	G	V	L	S
Query Conservation																.	.	.	.	.	.	.	.				.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.				.	.	.	.	.
Template Conservation
Template Sequence		D	D	L	L	E	G	L	Y	A	V	V	S	V	K	L	P	N	P	Q	F	E	G	Q	T	K	G	K	L	L	N	P	E	A	G	T	A	V	G	Q	V	V	Y	E	R	L	L	E	I	L	E	E
Template Known Secondary structure						T	T										S	S			B	S	S	S	S		S	S	B
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions