Job Description P23367 Confidence 100.00% Date Thu Jan 5 11:39:26 GMT 2012 Rank 9 Aligned Residues 318 % Identity 16% Template c1ei1B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:dna gyrase b; PDBTitle: dimerization of e. coli dna gyrase b provides a structural mechanism2 for activating the atpase catalytic center Resolution 2.30 Å

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		2	.	.	.	.		.	.	.	10	.	.	.						.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure							.								.	.	.	.	.																										.	.	.	.																														.	.	.	.
Query SS confidence							.								.	.	.	.	.																										.	.	.	.																														.	.	.	.
Query Sequence		P	I	Q	V	L	.	P	P	Q	L	A	N	Q	.	.	.	.	.	I	A	A	G	E	V	V	E	R	P	A	S	V	V	K	E	L	V	E	N	S	L	D	A	G	.	.	.	.	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	E	.	.	.	.
Query Conservation							.								.	.	.	.	.																										.	.	.	.																														.	.	.	.
Alig confidence							.								.	.	.	.	.																										.	.	.	.													.	.																.	.	.	.
Template Conservation																																																													.	.
Template Sequence		S	I	K	V	L	K	G	L	D	A	V	R	K	R	P	G	M	Y	I	G	D	T	D	D	G	T	G	L	H	H	M	V	F	E	V	V	D	N	A	I	D	E	A	L	A	G	H	C	K	E	I	I	V	T	I	H	A	D	N	.	.	S	V	S	V	Q	D	D	G	R	G	I	P	T	G	I	H	P	E	E
Template Known Secondary structure		G						T	T						S	T							S	S	S	S																				T	T											T	T	S	.	.								S	S					S	B		T	T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.			.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
						68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	A	L	A	L	A	R	H	A	T	S	K	I	A	S	L	D	D	L	E	A	I	I	S	L	G	F	R	G	E	A	L	A	S	I	S	S	V	S	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	G	T
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.													.	.																																							.
Template Conservation																		.	.																																							.
Template Sequence		G	V	S	A	A	E	V	I	M	T	V	L	H	A	G	G	.	.	K	F	D	D	N	S	Y	K	V	S	G	G	L	H	G	V	G	V	S	V	V	N	A	L	S	Q	K	L	E	L	V	I	Q	R	E	G	K	I	.	H	R	Q	I	Y	E	H	G	V	P	Q	A	P	L	A	V	T	G	E	T	E	K	T
Template Known Secondary structure		S	S	B								S	T	T		S	S	.	.		S	S	S	S	S		S	S		S			S	S									T											T	T			.							T	T			S	S									S
Template Predicted Secondary structure																		.	.																																							.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.			.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R	K	F	L	R	T	E	K	T	E	F	N	H	I	D	E	I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	N	G	K	I	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	F	L	E	Q
Query Conservation
Alig confidence							.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		G	T	M	V	R	.	.	.	.	F	W	P	S	L	E	T	F	T	N	V	T	E	F	E	Y	E	I	L	A	K	R	L	R	E	L	S	F	L	D	S	G	V	S	I	R	L	R	D	K	R	D	G	K	E	D	H	F	H	Y	E	G	G	I	K	A	F	V	E	Y	L	N	K	N	K	T	P	I	H	P	N
Template Known Secondary structure							.	.	.	.					T	T	T			S			S																	S	T	T								T	T	T										S										T	T	T	S		B	S		S	S
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		564	.	.	.	.					.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.										.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.
Query Sequence		A	L	A	I	E	W	Q	H	G	D	L	T	L	R	G	W	V	A	D	P	N	H	T	T	P	A	L	A	E	I	Q	Y	C	Y	V	N	G	R	M	M	R	D	.	.	.	.	.	.	.	.	.	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	Q	Q	P	A	F	V	L	Y	L	E	I
Query Conservation																																												.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		I	F	Y	F	S	T	E	K	D	G	I	G	V	E	V	A	L	Q	W	N	D	.	.	.	.	G	F	Q	E	N	I	Y	C	F	T	N	N	I	P	Q	R	D	G	G	T	H	L	A	G	F	R	A	A	M	T	R	T	L	N	A	Y	M	D	K	E	G	Y	S	K	K	A	K	V	S	A	T	G	D	D	A
Template Known Secondary structure										T	T										B	S	.	.	.	.	S										T	T				T	T		B																					T	T						T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660					.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.								.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.
Query Sequence		D	P	H	Q	V	D	V	N	V	H	P	A	K	H	E	V	R	F	H	Q	S	.	.	.	.	.	.	.	R	L	V	H	D	F	I	Y	Q	G	V	L	S	V	L	Q	Q	Q
Query Conservation																							.	.	.	.	.	.	.
Alig confidence									.														.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		R	E	G	L	I	A	V	.	V	S	V	K	V	P	D	P	K	F	S	S	Q	T	K	D	K	L	V	S	S	E	V	K	S	A	V	E	Q	Q	M	N	E	L	L	A	E	Y
Template Known Secondary structure			T	T					.						S	S			B	S	S	T	T			S	B
Template Predicted Secondary structure									.
Template SS confidence
		716	.	.	.	720	.	.		.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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