Job Description P23367 Confidence 100.00% Date Thu Jan 5 11:39:26 GMT 2012 Rank 3 Aligned Residues 281 % Identity 24% Template c1ea6A_ PDB info PDB header:dna repair Chain: A: PDB Molecule:pms1 protein homolog 2; PDBTitle: n-terminal 40kda fragment of nhpms2 complexed with adp Resolution 2.7 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	E	V	V	E	R	P	A	S	V	V	K	E	L	V	E	N	S	L	D	A	G	A	T	R	I	D	I	D	I	E	R	G	G	A	K	L	I	R	I	R	D	N	G	C	G	I	K	K	D	E	L	A	L	A	L	A	R	H	A	T	S	K	I	A	S	L	D	D	L	E	A	I	I	S	L	G	F
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	S	G	Q	V	V	L	S	L	S	T	A	V	K	E	L	V	E	N	S	L	D	A	G	A	T	N	I	D	L	K	L	K	D	Y	G	V	D	L	I	E	V	S	D	N	G	C	G	V	E	E	E	N	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L
Template Known Secondary structure									S															T	T		S								T	T	T	T	S								S					T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.																								.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		R	G	E	A	L	A	S	I	S	S	V	S	R	L	T	L	T	S	R	T	A	E	Q	Q	E	A	W	Q	A	Y	A	E	G	R	D	M	N	V	T	V	K	P	A	A	H	P	V	G	T	T	L	E	V	L	D	L	F	Y	N	T	P	A	R	R	K	.	F	L	R	T	E	K	T	E	F	N	H	I	D	E
Query Conservation																																																																			.
Alig confidence																																																																			.
Template Conservation
Template Sequence		T	L	E	A	L	S	S	L	C	A	L	S	D	V	T	I	S	T	C	H	A	S	A	K	V	G	T	R	L	M	F	D	H	N	G	K	I	I	Q	K	T	P	Y	P	R	P	R	G	T	T	V	S	V	Q	Q	L	F	S	T	L	P	V	R	H	K	E	F	Q	R	N	I	K	K	E	Y	A	K	M	V	Q
Template Known Secondary structure		T											S									T	T		S	S								T	T	S												S								S	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																			.	.	230	.	.	.
Predicted Secondary structure																								.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	R	R	I	A	L	A	R	F	D	V	T	I	N	L	S	H	N	G	K	I	.	.	V	R	Q	Y	R	A	V	P	E	G	G	Q	K	E	R	R	L	G	A	I	C	G	T	A	F	L	E	Q	A	L	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	Q	H	G	D
Query Conservation																								.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	H	A	Y	C	I	I	S	A	G	I	R	V	S	C	T	N	Q	L	G	Q	G	K	R	Q	P	V	V	C	T	G	G	S	P	S	I	K	E	N	I	G	S	V	F	G	Q	K	Q	L	Q	S	L	I	P	F	V	Q	L	P	P	S	D	S	V	C	E	E	Y	G	L	S	C	S	D	A	L	H	N	L
Template Known Secondary structure											T	T										T	T	S												S	S																T																		T							S	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		L	T	L	R	G	W	V	A	D	P	N	H	.	T	T	P	A	L	A	E	I	Q	Y	C	Y	V	N	G	R	M	M	R	D	R	L	I	N	H	A	I	R	Q	A	C	E	D	K	L	G	A	D	Q	Q	P	A	F	V	L	Y	L	E	I	D	P	H	Q	V	D	V	N	V	H	P	A	K	H	E	V	R	F
Query Conservation														.
Alig confidence														.																																	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	I	S	G	F	I	S	Q	C	T	H	G	V	G	R	S	S	T	D	R	Q	F	F	F	I	N	R	R	P	C	D	P	A	K	V	C	R	L	V	N	E	V	Y	H	.	M	Y	N	R	H	Q	Y	P	F	V	V	L	.	.	.	.	.	.	.	.	.	.	.	N	I	S	V	D	S	E	C	V	L	L
Template Known Secondary structure											S	S	T	T	T	S	B	S	S	S	T	T						T	T																		.				T	T		B						.	.	.	.	.	.	.	.	.	.	.						G	G	G
Template Predicted Secondary structure																																															.													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.												.	.	.	.	.	.	330	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	S	R	L	V	H	D	F	I	Y	Q	G	V	L	S	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	E	E	K	L	L	L	A	V	L	K	T	S	L	I	G	M	F
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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