Job Description P76208 Confidence 16.75% Date Thu Jan 5 12:20:33 GMT 2012 Rank 6 Aligned Residues 134 % Identity 12% Template c2bg9B_ PDB info PDB header:ion channel/receptor Chain: B: PDB Molecule:acetylcholine receptor protein, beta chain; PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution. Resolution 4.00 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		W	V	I	F	I	P	A	L	I	S	T	L	I	S	L	L	K	F	M	N	T	R	Q	E	N	K	E	G	I	N	A	V	M	L	D	F	T	H	V	M	I	D	M	M	Q	A	N	T	P	F	L	N	L	F	W	Y	N	S	P	T	P	N	F	N	G	G	V	.	N	V	M	F	W	V	I	F	I	L	I	F
Query Conservation																																																																					.
Alig confidence																						.																													.	.	.	.	.	.	.	.	.	.									.
Template Conservation																						.																													.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	T	I	V	P	C	I	L	I	S	I	L	A	I	L	V	F	Y	L	.	P	P	D	A	G	E	K	M	S	L	S	I	S	A	L	L	A	L	T	V	F	L	L	L	L	A	D	K	.	.	.	.	.	.	.	.	.	.	V	P	E	T	S	L	S	V	P	I	I	I	S	Y	L	M	F	I	M	I	L
Template Known Secondary structure																					S	.	T	T	T		T	T																							.	.	.	.	.	.	.	.	.	.						T	T	S				S
Template Predicted Secondary structure																						.																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.											270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		97	.	.	100	.	.	.	.	.	.													.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	L	A	L	Q	D	S	G	A	.	.	.	.	.	.	.	.	.	.	.	.	R	M	S	R	Q	A	R	F	L	R	E	G	V	E	D	Q	L	I	L	E	K	A	K	G	E	E	G	L	T	R	E	Q	I	E	S	R	I	V	V	P	H	H	T	I	F	L	Q	F	F	S	L	Y	I	L	P	V	I	C
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	F	S	V	I	L	S	V	V	V	L	N	L	H	H	R	S	P	N	T	H	E	A	V	E	A	I	K	Y	I	A	E	Q	L	E	S	A	S	E	F	D	D	L	K	K	D	W	Q	Y	V	A	M	V	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	F	L	Y	I	F	I	T	M
Template Known Secondary structure																		T		T	T	T																													S		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.															.	.	.	350	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	G	Y	V	F	F	S	L	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	S	I	G	T	F	S	I	F	L	D	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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