Job Description P67080 Confidence 99.78% Date Thu Jan 5 12:10:23 GMT 2012 Rank 40 Aligned Residues 207 % Identity 13% Template c2yxxA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) Resolution 1.70 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		N	L	A	Q	V	R	D	K	I	S	A	A	A	T	R	C	G	R	S	P	E	E	I	T	L	L	A	V	S	K	T	K	P	.	A	S	A	I	A	E	A	I	D	A	G	Q	R	Q	F	G	E	N	Y	V	Q	E	G	V	D	K	I	R	H	F	Q	E	L	G	V	T	G	L	E	W	H	F	I	G	P	L
Query Conservation																																			.
Alig confidence																					.	.													.													.																						.	.	.	.
Template Conservation																					.	.																										.																						.	.	.	.
Template Sequence		F	E	E	T	L	R	K	R	S	R	L	V	K	E	V	F	E	G	V	.	.	N	L	L	P	T	F	A	V	K	A	N	N	N	P	V	L	L	K	I	L	R	E	E	G	F	.	G	X	D	V	V	T	K	G	E	L	L	A	A	K	L	A	G	V	P	S	H	.	.	.	.	T	V	V	W	N	G	N	G
Template Known Secondary structure																	T	T	T	S	.	.								G	G	G													T	T		.						S										T	T			G	G	.	.	.	.	G						S
Template Predicted Secondary structure																					.	.																										.																						.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.													.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																.																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	S	N	K	S	R	L	V	A	E	H	F	D	W	.	C	H	T	I	D	R	L	R	I	A	T	R	L	N	D	Q	R	P	A	E	L	P	P	L	N	V	L	I	Q	I	N	I	S	D	E	.	.	.	.	.	.	.	.	.	.	.	.	N	S	K	S	G	I	Q	L	A	E	L	D	E	L	A	A	A	V
Query Conservation																.																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																				.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.
Template Sequence		K	S	R	D	Q	X	E	H	F	L	R	E	D	V	R	I	V	N	V	D	S	F	E	E	X	E	I	W	R	E	L	N	P	E	.	.	.	G	V	E	Y	F	I	R	V	N	P	E	V	D	A	K	T	H	P	H	I	S	T	G	L	K	K	H	K	F	G	I	P	L	E	D	L	D	S	F	X	E	R	F
Template Known Secondary structure													T	T																					T	.	.	.	T													T	T	T	S										S	S	S	S			G	G	G
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																				.																												.	.	.	.
Query SS confidence																				.																												.	.	.	.
Query Sequence		A	E	L	P	R	L	R	L	R	G	L	M	A	I	P	A	P	E	.	S	E	Y	V	R	Q	F	E	V	A	R	Q	M	A	V	A	F	A	G	L	K	T	R	Y	P	H	I	.	.	.	.	D	T	L	S	L	G	M	S	D	D	M	E	A	A	I	A	A	G	S	T	M	V	R	I	G	T	A	I	F
Query Conservation																				.																												.	.	.	.
Alig confidence		.	.	.																.																												.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	R	S	X	N	I	R	G	L	H	V	H	I	G	S	Q	I	T	R	V	E	P	F	V	E	A	F	S	K	V	V	R	A	S	E	R	Y	G	F	E	E	I	N	I	G	G	G	W	G	I	N	Y	S	G	E	E	L	D	L	S	S	Y	R	E	K	V	V	P	D	L	K	R	F	K	R	V	I
Template Known Secondary structure		.	.	.	T	T	S											S	S	B			S																		T		S								B				S	S	S												T	G	G	G	G	T	T		S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions