Job Description P67080 Confidence 99.97% Date Thu Jan 5 12:10:23 GMT 2012 Rank 25 Aligned Residues 214 % Identity 9% Template c2qghA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		N	L	A	Q	V	R	D	K	I	S	A	A	A	T	R	C	G	R	S	P	E	E	I	T	L	L	A	V	S	K	T	K	P	.	A	S	A	I	A	E	A	I	D	A	G	Q	R	Q	F	G	E	N	Y	V	Q	E	G	V	D	K	I	R	H	F	Q	E	L	G	V	T	G	L	E	W	H	F	I	G	P	L
Query Conservation																																			.
Alig confidence																					.	.													.													.																						.	.	.	.
Template Conservation																					.	.																										.																						.	.	.	.
Template Sequence		D	F	D	K	I	K	Q	A	F	L	N	Y	K	E	A	F	K	G	R	.	.	K	S	L	I	C	Y	A	L	K	A	N	S	N	L	S	I	L	S	L	L	A	H	L	E	S	.	G	A	D	C	V	S	I	G	E	I	Q	R	A	L	K	A	G	I	K	P	Y	.	.	.	.	R	I	V	F	S	G	V	G
Template Known Secondary structure																T	T		S	S	.	.								G	G	G													T	T		.					S	S										T	T			G	G	.	.	.	.	G						T	T
Template Predicted Secondary structure																					.	.																										.																						.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.
			86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.													130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure		.																																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	Q	S	N	K	S	R	L	V	A	E	H	F	D	W	C	H	T	I	D	R	L	R	I	A	T	R	L	N	D	Q	R	P	A	E	L	P	P	L	N	V	L	I	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	N	I	S	D	E	N	S	K	S	G	I	Q	L	A	E	L	D	E	L	A	A	A	V
Query Conservation		.																																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	A	F	E	I	E	Q	A	L	K	L	N	I	L	F	L	N	V	E	S	F	M	E	L	K	T	I	E	T	I	A	Q	S	L	G	I	K	A	R	I	S	I	R	I	N	P	N	I	D	A	K	T	H	P	Y	I	S	T	G	L	K	E	N	K	F	G	V	G	E	K	E	A	L	E	M	F	L	W	A
Template Known Secondary structure													T	T		S						S															T									B								S		G	G	G	B			S	T	T	S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		A	E	L	P	R	L	R	L	R	G	L	M	A	I	P	A	P	E	S	.	E	Y	V	R	Q	F	E	V	A	R	Q	M	A	V	A	F	A	G	L	K	T	R	Y	P	H	I	D	T	L	S	L	G	M	S	D	D	M	E	A	A	I	A	A	G	S	T	M	V	R	I	G	T	A	I	F	G
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		K	K	S	A	F	L	E	P	V	S	V	H	F	H	I	G	S	Q	L	L	D	L	E	P	I	I	E	A	S	Q	K	V	A	K	I	A	K	S	L	I	A	L	G	I	D	L	R	F	F	D	V	G	G	G	I	G	V	S	Y	E	N	E	E	T	I	K	L	Y	D	Y	A	Q	G	I	L	N
Template Known Secondary structure					S	S											B	S	S	B																							T	T												B				T	T	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions