Return to main results Retrieve Phyre Job Id

Job DescriptionP67080
Confidence100.00%DateThu Jan 5 12:10:23 GMT 2012
Rank5Aligned Residues222
% Identity15%Templatec1xfcB_
PDB info PDB header:isomeraseChain: B: PDB Molecule:alanine racemase; PDBTitle: the 1.9 a crystal structure of alanine racemase from mycobacterium2 tuberculosis contains a conserved entryway into the active site
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30...... ...40 .........50.........60.........70.....
Predicted Secondary structure 









....


.









Query SS confidence 



































. . . .



.


































Query Sequence  MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSK. . . . TKPA. SAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVT
Query Conservation 
  
  

  
  

             
 
  


.... 
  .  
      
     

   

             
Alig confidence 





















....









....



.































...
Template Conservation 
  
 


 

  
   
    ....    
  









   
   
   
   
 

   

  

  
   ...
Template Sequence  LAEAMVDLGAIEHNVRVLREHA. . . . GHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITA. . .
Template Known Secondary structure 
....TTS
TT
TT

S
TT

S...
Template Predicted Secondary structure 



....




















...
Template SS confidence 















































































   11........20.........30.. .......40.........50.........60.........70.........80...
 
   76...80.........90.........100.........110.........120.........130.........140.. .......150....
Predicted Secondary structure 




























.
Query SS confidence 


































































.











Query Sequence  GLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQL. AELDELAAAVAE
Query Conservation        

                   


      
   
   
    
 
 




 
   
   . 
       
  
Alig confidence  ..


















.












































.











Template Conservation  .. 

                .     


   
  
   
        
 
 



  
 
    
             
Template Sequence  . . PVLAWLHPPGIDFGPALLA. DVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTGLNRNGVGPAQFPAMLTALRQAMA
Template Known Secondary structure  ..




TT


T.T

ST

B
SS

SSSB
TTT
Template Predicted Secondary structure  ..




.






















Template SS confidence 















































































   84.....90.........100.. .......110.........120.........130.........140.........150.........160
 
   155....160.........170..... ....180.........190.........200.........210.........220.........230..
Predicted Secondary structure 











..






















Query SS confidence 




















. .
























































Query Sequence  LPRLRLRGLMAIPAPESEYVR. . QFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS
Query Conservation     
 
 

 

    
    ..              
         

 
 
     
   
   

 
  


   
 
Alig confidence 




















..
























































Template Conservation     
 
 

 

              
   
      
   
         

           
 

 
 



     
Template Sequence  EDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVP
Template Known Secondary structure  TTS


S
SS
TTSTT


S

GGG

S


GGGGT

SSG
Template Predicted Secondary structure 

































Template SS confidence 















































































   161........170.........180.........190.........200.........210.........220.........230.........240
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions