Phyre 2 alignment of P60906 with d1e1oa2

Job Description P60906
Confidence 99.96% Date Thu Jan 5 12:07:14 GMT 2012

Rank 32 Aligned Residues 302

% Identity 13% Template d1e1oa2

SCOP info Class II aaRS and biotin synthetases Class II aaRS and biotin synthetases Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain

Resolution 2.12

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G	T	A	G	C	V	R	A
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.
Template Sequence	N	D	K	S	R	Q	T	F	V	V	R	S	K	I	L	A	A	I	R	Q	F	M	V	A	R	G	F	M	E	V	E	T	P	M	M	Q	V	.	.	.	.	.	.	.	.	.	I	P	G	G	A	S	A	R	P	F	I	T	H	H	N	A	L	D	L	D	M	Y	L	R	I	A	P	E	L	Y	L	K	R	L
Template Known Secondary structure																								T	T	T								S			S	.	.	.	.	.	.	.	.	.	S			S	S										T	T	T	T							S		S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.
Template SS confidence
	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.										.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

	92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence	G	I	E	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S	E	H	V	T	L	.	.	E	L	N	S	I	G
Query Conservation																																																																									.	.
Alig confidence							.	.	.	.	.	.																	.																																												.	.
Template Conservation							.	.	.	.	.	.																	.
Template Sequence	V	V	G	G	F	E	.	.	.	.	.	.	R	V	F	E	I	N	R	N	F	R	N	E	G	I	S	V	.	H	N	P	E	F	T	M	M	E	L	Y	M	A	Y	A	D	Y	H	D	L	I	E	L	T	E	S	L	F	R	T	L	A	Q	E	V	L	G	T	T	K	V	T	Y	G	E	H	V	F	D	F	G
Template Known Secondary structure				T			.	.	.	.	.	.																	.			S											S																							S	S	S					T	T					T	T
Template Predicted Secondary structure							.	.	.	.	.	.																	.
Template SS confidence
	247	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.										.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																																													.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.																																													.	.	.	.	.	.	.	.	.
Query Sequence	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	.	.	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	E	.	.	.	.	.	.	.	.	.	E	S	R	E	H	F	A
Query Conservation																			.	.																																													.	.	.	.	.	.	.	.	.
Alig confidence																			.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	P	F	E	K	L	T	M	R	E	A	I	K	K	Y	R	P	E	T	D	M	A	D	L	D	N	F	D	A	A	K	A	L	A	E	S	I	G	I	T	V	E	K	S	W	G	L	G	R	I	V	T	E	I	F	D	E	V	A	E	A	H	L	I	Q	P	T	F	I	T	E	Y	P	A	E	V	S	P	L	A
Template Known Secondary structure	S															S	T	T			G	G	G	G	G	S											T	T					T	T															T	G	G	G			S								B	G	G	G		T	T	B
Template Predicted Secondary structure
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

	239	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure													.	.	.	.	.	.	.																		.
Query SS confidence													.	.	.	.	.	.	.																		.
Query Sequence	G	L	C	K	L	L	E	S	A	G	I	A	.	.	.	.	.	.	.	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	.	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E
Query Conservation													.	.	.	.	.	.	.																		.
Alig confidence													.	.	.	.	.	.	.																		.													.
Template Conservation																																																		.
Template Sequence	R	R	N	D	V	N	P	E	I	T	D	R	F	E	F	F	I	G	G	R	E	I	G	N	G	F	S	E	L	N	D	A	E	D	Q	A	E	R	F	Q	E	Q	V	N	A	K	A	A	G	.	D	D	E	A	M	F	Y	D	E	D	Y	V	T	A	L	E	Y	G	L	P	P	T	A	G	L	G	I	G	I	D
Template Known Secondary structure		B		S	S		T	T	B	B	S							T	T									B																				T	T	.		T	T																		S
Template Predicted Secondary structure																																																		.
Template SS confidence
	401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

	311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence	R	L	V	L	L	V	Q	A	V	N	P	E	F	K	A	D	P	V	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	M	I	M	L	F	T	N	S	H	T	I	R	D	V	I	L	F	P	A
Template Known Secondary structure								T		S	S	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions