Phyre 2 alignment of P60906 with c3racA

Job Description P60906
Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012

Rank 26 Aligned Residues 301

% Identity 24% Template c3racA_

PDB info PDB header:ligase Chain: A: PDB Molecule:histidine-trna ligase; PDBTitle: crystal strucutre of histidine--trna ligase subunit from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446.

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G	T
Query Conservation
Alig confidence																																																							.	.	.
Template Conservation																																																							.	.	.
Template Sequence	D	R	P	P	G	M	Q	D	G	Y	P	D	F	A	K	R	R	R	A	V	E	T	R	L	L	S	F	V	E	D	A	G	Y	E	P	V	T	S	G	L	F	E	Y	V	D	T	L	L	R	A	R	S	P	E	.	.	.	S	S	R	D	W	I	R	L	F	D	G	G	G	D	A	V	A	L	R	P	E	M	T
Template Known Secondary structure				T	T						T	T																			T	T								S									T	T	S		T	T	.	.	.	S						B					S	S	S						S	S	S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
	21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence	A	G	C	V	R	A	G	I	E	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	.	G	P	D	I	D	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S	E	H	V	T	L	E
Query Conservation																																																				.
Alig confidence																															.	.	.	.	.	.																.																						.
Template Conservation																															.	.	.	.	.	.																																						.
Template Sequence	P	S	I	A	R	M	A	A	P	R	V	A	A	G	R	T	P	I	R	W	C	Y	C	E	R	V	Y	R	R	T	.	.	.	.	.	.	A	A	E	S	T	Q	V	G	I	E	R	I	G	E	E	A	S	V	D	V	D	M	D	V	L	R	L	L	H	E	A	S	A	A	A	G	V	.	R	H	H	R	I	V
Template Known Secondary structure													T	T																	.	.	.	.	.	.													S	S																						T		.		S
Template Predicted Secondary structure																															.	.	.	.	.	.																																						.
Template SS confidence
	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.							.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170

	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	S	H	A	R	L	V	P	R	L	L	D	A	L	G	I	S	A	S	L	S	R	A	F	L	A	C	L	T	S	G	N	Y	V	Q	F	R	E	L	W	Q	L	H	A	A	K	D	V	D	L	L	A	N	L	L	T	W	S	P	A	E	R	D	A	A	K	R	S	R	E	A	S	D	R	E	L	E	A	L	L
Template Known Secondary structure				T	T									T	T																T														S			S									B				S	S		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

								226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.																										.	.	.
Query SS confidence	.	.	.	.	.	.	.																										.	.	.
Query Sequence	.	.	.	.	.	.	.	G	D	Y	L	D	E	E	S	R	E	H	F	A	G	L	C	K	L	L	E	S	A	G	I	A	.	.	.	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L
Query Conservation	.	.	.	.	.	.	.																										.	.	.
Alig confidence	.	.	.	.	.	.	.																										.	.	.																												.	.
Template Conservation																																																															.	.
Template Sequence	R	D	A	V	D	P	R	A	A	A	D	V	R	D	A	W	R	Y	L	C	R	L	A	E	A	L	H	D	S	G	L	A	S	D	V	V	T	F	D	L	A	L	H	R	E	L	D	Y	Y	T	G	L	V	F	E	M	F	A	P	G	V	G	.	.	A	P	I	A	Q	G	G	R	Y	D	E	L	L	A	Q	F
Template Known Secondary structure	T	T		S																										T			T	T	T					T	T				S		T	T			S								T	T		S	.	.	S		S							T	T	T	T	G	G	G
Template Predicted Secondary structure																																																															.	.
Template SS confidence
	263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R	L	V	L	L	V	Q	A	V
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	G	A	G	A	P	A	V	G	F	A	F	E	V	E	R	V	M	A	V	L	E	A	Q
Template Known Secondary structure	.	T
Template Predicted Secondary structure	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions