Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 4 Aligned Residues 405 % Identity 22% Template c3netB_ PDB info PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from nostoc sp. pcc 7120 Resolution 2.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	Q	A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E
Query Conservation
Alig confidence																																																										.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.
Template Sequence		N	F	S	T	P	S	G	F	P	E	F	L	P	S	E	K	R	L	E	L	Y	L	L	D	T	I	R	R	V	Y	E	S	Y	G	F	T	P	I	E	T	P	A	V	E	R	L	E	V	L	Q	A	K	G	N	Q	D	.	.	.	.	.	.	N	I	I	Y	G	L	E	P	I	L	E	A	R	A	L	K	F	D
Template Known Secondary structure							T	T																										T	T								S									T	T	T				.	.	.	.	.	.		B			B												S
Template Predicted Secondary structure																																																										.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		G	T	A	G	C	V	R	A	G	I	E	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	.	.	P	D	I	D	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S	E	H	V
Query Conservation																																																								.	.
Alig confidence																																		.	.	.	.	.																		.	.																							.
Template Conservation																																		.	.	.	.	.																																										.
Template Sequence		Q	T	V	P	L	A	A	Y	I	A	R	H	L	N	D	L	T	F	P	F	A	R	Y	Q	X	D	V	V	F	R	G	E	.	.	.	.	.	R	F	R	Q	F	R	Q	C	D	I	D	V	V	G	R	E	K	L	S	L	L	Y	D	A	Q	X	P	A	I	I	T	E	I	F	E	A	V	N	I	G	D	.	F
Template Known Secondary structure		S												G	G	G	S		S	S												B		.	.	.	.	.			S												S	S				T																		T				.
Template Predicted Secondary structure																																		.	.	.	.	.																																										.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		T	L	E	L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	.	.	.	.	.	.	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	E	E	S	R	E
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	R	I	N	N	R	K	V	L	T	G	F	F	Q	S	L	N	I	S	E	T	Q	I	K	S	C	I	S	I	I	D	N	L	E	V	K	L	E	L	E	K	E	T	Q	K	I	I	D	F	V	K	I	D	G	S	V	D	D	V	L	D	K	L	K	H	L	S	Q	T	L	S	E	Q	F	N	L	G	V	S
Template Known Secondary structure																T	T	T	T										S	S	T	T	T	T					S	T	T	T	T				T	T					T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	A	G	L	C	K	L	L	E	S	A	G	I	A	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R	L	V	L	L
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		E	L	E	T	V	I	T	G	V	R	N	L	G	V	.	P	D	K	R	F	C	I	D	L	A	I	A	Y	Y	T	G	T	V	Y	E	T	T	L	I	G	H	E	A	L	G	S	I	C	S	G	G	R	Y	E	E	L	V	G	T	F	I	G	E	K	X	P	G	V	G	I	S	I	G	L	T	R	L	I	S	R
Template Known Secondary structure													T	T		.		G	G	G					T	T														T	T		G	G	G			S	S						S	S	S	S		T	T	T	T	S
Template Predicted Secondary structure																.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		316		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		V	.	Q	A	V	N	P	E	F	K	A	D	P	V	V	D	I	Y	L	V	A	S	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	V	A	V	V	L	G	E	S	E	V	A	N
Query Conservation			.
Alig confidence			.																																							.	.
Template Conservation																																										.	.
Template Sequence		L	L	K	A	G	I	L	N	T	L	P	P	T	P	A	Q	V	V	V	V	N	X	Q	D	E	L	X	P	T	Y	L	K	V	S	Q	Q	L	R	Q	A	.	.	G	L	N	V	I	T	N	F	E	K	R	Q	L	G	K	Q	F	Q	A	A	D	K	Q	G	I	R	F	C	V	I	I	G	A	D	E	A	A	A
Template Known Secondary structure					T	T		S					S										S		G	G	G														T	.	.	T								S														T	T														T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	V	V	K	D	L	R	S	G	E	Q	T	A	V	A	Q	D	S	V	A	A	H	L	R	T	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	S	S	L	K	D	L	Q	S	G	E	Q	V	E	V	A	L	A	D	L	A	E	E	I	K	R	R	L
Template Known Secondary structure		T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.