Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 5 Aligned Residues 365 % Identity 25% Template c3hriF_ PDB info PDB header:ligase Chain: F: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase (apo) from trypanosoma brucei Resolution 2.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	N	I	Q	A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L
Query Conservation
Alig confidence				.	.																																																								.	.	.											.	.	.
Template Conservation				.	.																																																								.	.	.											.	.	.
Template Sequence		V	E	.	.	T	E	P	V	Q	G	C	R	D	F	P	P	E	T	M	R	L	R	K	Y	L	F	D	V	F	H	S	T	A	R	K	F	G	F	E	E	Y	D	S	P	V	L	E	S	E	E	L	Y	I	R	K	A	G	E	E	.	.	.	I	T	E	Q	M	F	N	F	I	T	.	.	.	H	R	V	A	L
Template Known Secondary structure				.	.		S		S	T	T																										T	T								S													G	G	.	.	.	G	G	G	G	S						.	.	.
Template Predicted Secondary structure				.	.																																																								.	.	.											.	.	.
Template SS confidence
		48	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.				.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		R	P	E	G	T	A	G	C	V	R	A	G	I	E	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S	.	E
Query Conservation																																																																																.
Alig confidence																																																																																.
Template Conservation
Template Sequence		R	P	E	M	T	P	S	L	A	R	Q	L	L	A	K	G	R	S	L	L	L	P	A	K	W	Y	S	I	P	Q	C	W	R	Y	E	A	I	T	R	G	R	R	R	E	H	Y	Q	W	N	M	D	I	I	G	V	K	S	V	S	S	E	V	E	L	V	C	A	A	C	T	A	M	Q	S	L	G	L	S	S	K
Template Known Secondary structure			S		S												G	G	G	S		S	S															S	S	S	S			S											S			S	T																	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	T	L	E	L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	E	E	S	R	E	H	F	A	G
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	G	V	K	I	N	S	R	K	I	L	Q	T	V	V	E	D	K	F	A	P	V	C	V	I	L	K	T	I	D	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	R	E	H	E	A	V	R	E	L	R	D
Template Known Secondary structure		T													T	T																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.																																			.	.	.	.	240	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure													.	.																																																		.
Query SS confidence													.	.																																																		.
Query Sequence		L	C	K	L	L	E	S	A	G	I	A	.	.	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	.	T	P	A	V	G	F	A	M	G	L	E	R	L	V	L	L	V
Query Conservation													.	.																																																		.
Alig confidence													.	.																													.																					.
Template Conservation																																											.
Template Sequence		F	I	T	Q	I	E	A	Y	G	F	G	D	W	V	I	F	D	A	S	V	V	R	G	L	A	Y	Y	T	G	I	V	F	E	G	F	D	R	D	G	N	F	.	R	A	L	C	G	G	G	R	Y	D	N	L	L	T	T	Y	G	S	P	T	A	V	P	C	V	G	F	G	F	G	D	C	V	I	V	E	L	L
Template Known Secondary structure										T		T	T	T					T	T			T	T	T	T	T			S								T	T	S		S	.			S							T	T					T	T		S	S											S	S
Template Predicted Secondary structure																																											.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	N	P	E	F	K	A	D	P	V	V	D	I	Y	L	V	A	S	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	V	A	V	V	L	G	E	S	E	V	A	N	G	T
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		N	E	K	K	L	L	P	E	L	H	H	V	V	D	D	L	V	I	P	F	D	E	T	M	R	P	H	A	L	S	I	L	R	R	L	R	D	A	.	.	G	R	S	A	D	I	V	F	D	K	K	K	V	V	Q	A	F	N	Y	A	D	R	I	G	A	L	R	A	V	L	V	A	P	D	E	W	A	R	G	E
Template Known Secondary structure					.										S						S	S	G	G	G														T	.	.	T								S													T	T	T		S												T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.			.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	V	K	D	L	R	S	G	E	Q	T	A	V	A	Q	D
Query Conservation
Alig confidence							.	.	.
Template Conservation							.	.	.
Template Sequence		V	R	V	K	M	.	.	.	L	R	G	I	V	L	P	V	D
Template Known Secondary structure							.	.	.
Template Predicted Secondary structure							.	.	.
Template SS confidence
		449	450	.	.	.				.	.	.	.	.	.	460	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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