Phyre 2 alignment of P60906 with c3h16A

Job Description P60906
Confidence 40.24% Date Thu Jan 5 12:07:14 GMT 2012

Rank 105 Aligned Residues 67

% Identity 24% Template c3h16A_

PDB info PDB header:signaling protein Chain: A: PDB Molecule:tir protein; PDBTitle: crystal structure of a bacteria tir domain, pdtir from2 paracoccus denitrificans

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence	P	V	V	D	I	Y	L	V	A	S	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	.	.	.	.	V	A	V	V	L	G	E	S	E	V	A	N	G
Query Conservation																																																									.	.	.	.
Alig confidence																													.	.																											.	.	.	.
Template Conservation																													.	.
Template Sequence	P	P	H	D	I	F	I	S	H	A	W	E	D	K	A	D	F	V	E	A	L	A	H	T	L	R	A	A	.	.	G	A	E	V	W	Y	D	D	F	S	L	R	P	G	D	S	L	R	R	S	I	D	K	G	L	G	S	S	R	F	G	I	V	V	L	S	T	H	F	F	K	K	E
Template Known Secondary structure		S									G	G	G	T	T	T	T												.	.	T						G	G	G				T	T												T	S														T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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