Job Description P60906 Confidence 99.80% Date Thu Jan 5 12:07:14 GMT 2012 Rank 58 Aligned Residues 149 % Identity 14% Template c3errB_ PDB info PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase Resolution 2.27 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G	T	A	G	C
Query Conservation
Alig confidence																																																	.	.														.	.	.
Template Conservation																																																	.	.														.	.	.
Template Sequence		S	R	S	Y	A	L	K	G	D	L	A	L	Y	E	L	A	L	L	R	F	A	M	D	F	M	A	R	R	G	F	L	P	M	T	L	P	S	Y	A	R	E	K	A	F	L	G	T	.	.	G	H	F	P	A	Y	R	D	Q	V	W	A	I	.	.	.	A	E	T	D	L	Y	L	T	G	T	A	E	V	V	L
Template Known Secondary structure		S	S				B																						T	T								S											.	.	T		T	T	T	T	G	G	G					.	.	.	T	T	S	S					S	S	T
Template Predicted Secondary structure																																																	.	.														.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		89	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.								.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure								.																						.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence								.																						.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		V	R	A	G	I	E	.	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	.	.	.	.	.	.	.	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	.	.	.	.	G	P	D	I	D	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G
Query Conservation								.																						.	.	.	.	.	.	.																						.	.	.	.
Alig confidence								.																						.	.	.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		N	A	L	H	S	G	E	I	L	P	Y	E	A	L	P	L	R	Y	A	G	Y	A	P	A	F	R	S	E	A	G	S	F	G	K	D	V	R	G	L	M	R	V	H	Q	F	H	K	V	E	Q	Y	V	L	T	E	A	S	L	E	A	S	D	R	A	F	Q	E	L	L	E	N	A	E	E	I	L	R	L	L	E
Template Known Secondary structure					T	T	T					G	G	G		S															S			S	S	S		S	S	S	S	S		S													S																							T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		157	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	E	H	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	Y	R	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions