Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 15 Aligned Residues 379 % Identity 17% Template c3a32A_ PDB info PDB header:ligase Chain: A: PDB Molecule:probable threonyl-trna synthetase 1; PDBTitle: crystal structure of putative threonyl-trna synthetase2 thrrs-1 from aeropyrum pernix Resolution 2.30 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G	T	A	G
Query Conservation
Alig confidence																																																		.	.														.
Template Conservation																																																		.	.														.
Template Sequence		G	A	G	V	P	L	F	S	L	G	G	G	P	I	R	Y	A	L	A	E	V	L	A	K	F	H	A	R	R	G	Y	Y	V	V	E	T	P	I	I	A	S	T	E	L	F	K	V	S	.	.	G	H	I	E	F	Y	R	N	N	M	Y	L	F	.	D	I	E	G	H	E	F	A	V	K	P	M	N	C	P	Y
Template Known Secondary structure			T	T				B		T	T																			T	T								S				T						T	.	.				T	T	G	G	G	G	S				.			T	T							S		S
Template Predicted Secondary structure																																																		.	.														.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		88	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure								.	.	.	.																											.	.	.	.																								.	.	.	.	.
Query SS confidence								.	.	.	.																											.	.	.	.																								.	.	.	.	.
Query Sequence		C	V	R	A	G	I	.	.	.	.	E	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	.	.	.	.	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	A	.	.	.	.	.	E	L	I	M	L	T	A	R	W	W	R	A
Query Conservation								.	.	.	.																											.	.	.	.																								.	.	.	.	.
Alig confidence								.	.	.	.																											.	.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		H	I	L	L	F	L	N	E	V	A	K	H	R	S	K	L	P	L	P	F	K	V	F	E	F	G	R	V	H	R	Y	E	P	S	G	S	I	Y	G	L	L	R	V	R	G	F	T	Q	D	D	A	H	I	I	V	P	G	G	R	V	I	D	V	V	Y	D	V	F	E	E	M	K	L	V	L	E	R	L	F	K
Template Known Secondary structure														G	G	G	S		S	S															G	G	G		B	T	T	T	B		S													G	G	G																			T	S
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	I	S	E	H	V	T	L	E	L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	E	E	S	R
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	V	S	S	E	T	F	K	V	R	L	S	M	S	D	K	S	L	I	G	K	E	F	M	G	S	K	E	E	W	E	G	A	E	E	A	L	R	E	A	A	S	R	I	N	E	K	Y	G	I	D	I	V	E	L	E	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	T	T	T										G	G	G	B	T	T	T	B		S																															T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	F	A	G	L	C	K	L	L	E	S	A	G	I	A	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R	L	V	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	A	A	F	Y	G	P	K	L	D	F	I	M	M	V	E	E	S	G	V	S	K	E	W	Q	M	G	T	I	Q	F	D	F	N	L	P	R	R	F	R	L	Y	D	V	V	R	E	E	F	G	I	E	E	V	Y	I	I	H	R	A	L	L	G	S	I	E	R	F	L	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S	B	T	T	B											S	S	S														S	S					T	T												S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		315	.			.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.							.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.
Predicted Secondary structure				.	.																					.	.	.	.	.	.																																.																.
Query SS confidence				.	.																					.	.	.	.	.	.																																.																.
Query Sequence		L	V	.	.	Q	A	V	N	P	E	F	K	A	D	P	V	V	D	I	Y	L	V	A	S	.	.	.	.	.	.	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	.	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	.	V	A
Query Conservation				.	.																					.	.	.	.	.	.																																.																.
Alig confidence				.	.																					.	.	.	.	.	.																			.	.												.																.
Template Conservation																																																		.	.
Template Sequence		V	Y	L	E	H	R	R	G	R	M	P	F	T	L	A	P	I	Q	F	A	V	I	A	V	K	T	G	G	E	V	D	R	E	I	E	D	L	A	S	S	I	A	K	G	L	L	D	K	.	.	G	F	R	V	A	V	K	G	S	S	K	T	G	L	S	S	D	V	R	H	I	E	S	T	A	K	P	A	V	N
Template Known Secondary structure							T	T	T				G	G	G		S		S									S	S	T	T																		T	.	.	T										T	T	T											T	T			S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.					.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		V	V	L	G	E	S	E	V	A	N	G	T	A	V	V	K	D	L	R	S	G	E	.	.	.	.	Q	T	A	V	A	Q	D	S	V	A	A	H	L	R	T	L	L
Query Conservation																								.	.	.	.
Alig confidence																								.	.	.	.
Template Conservation
Template Sequence		V	F	I	G	A	K	E	V	R	E	K	V	L	D	V	R	V	F	D	L	E	S	M	K	R	R	R	L	A	I	A	Y	G	D	A	A	D	A	V	E	N	L	A
Template Known Secondary structure												T									T	T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.