Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 9 Aligned Residues 388 % Identity 17% Template c2i4lC_ PDB info PDB header:ligase Chain: C: PDB Molecule:proline-trna ligase; PDBTitle: rhodopseudomonas palustris prolyl-trna synthetase Resolution 2.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L	R	P	E	G	T
Query Conservation
Alig confidence																																																				.	.
Template Conservation																																																				.	.
Template Sequence		Q	E	A	A	G	I	Y	A	W	L	P	L	G	H	R	V	L	K	K	I	E	Q	I	V	R	E	E	Q	N	R	A	G	A	I	E	L	L	M	P	T	L	Q	L	A	D	L	W	R	E	S	.	.	G	R	Y	D	A	Y	G	P	E	M	L	R	I	A	D	R	H	K	R	E	L	L	Y	G	P	T	N	E
Template Known Secondary structure					T	T																										T	T								S											.	.	T					S		T	T	S						T	T								S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		86	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																					.						.	.																								.	.	.
Query SS confidence												.																					.						.	.																								.	.	.
Query Sequence		A	G	C	V	R	A	G	I	E	H	.	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	.	R	P	Q	K	G	.	.	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	A	E	.	.	.	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S
Query Conservation												.																					.						.	.																								.	.	.
Alig confidence												.																					.						.	.																								.	.	.
Template Conservation
Template Sequence		E	M	I	T	E	I	F	R	A	Y	I	K	S	Y	K	S	L	P	L	N	L	Y	H	I	Q	W	K	F	R	D	E	Q	R	P	R	F	G	V	M	R	G	R	E	F	L	M	K	D	A	Y	S	F	D	V	D	E	A	G	A	R	K	S	Y	N	K	M	F	V	A	Y	L	R	T	F	A	R	M	G	L	K
Template Known Secondary structure														B	G	G	G		S														S	S		B	T	G	G	G	B		S												S	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	V	T	L	E	L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	E	E	S	R	E	H	F	A
Query Conservation
Alig confidence		.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	A	I	P	M	R	A	E	T	G	P	I	G	G	D	L	S	H	E	F	I	V	L	A	E	T	G	E	S	G	V	Y	I	D	R	D	V	L	N	L	P	V	P	D	E	N	V	D	Y	D	G	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	I	K	Q	W	T
Template Known Secondary structure		.	.										T	T			S										T	T		S							G	G	G	G	G						T	T			T	T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T
Template Predicted Secondary structure		.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.																			.	.	.	.	.	250	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	C	K	L	L	E	S	A	G	I	A	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R	L	V	L	L	V	Q	A
Query Conservation
Alig confidence																																																						.	.
Template Conservation																																																						.	.
Template Sequence		S	V	Y	A	A	T	E	D	V	H	E	P	A	R	Y	E	S	E	V	P	E	A	N	R	L	N	T	R	G	I	E	V	G	Q	I	F	Y	F	G	T	K	Y	S	D	S	M	K	A	N	V	T	G	.	.	P	D	G	T	D	A	P	I	H	G	G	S	Y	G	V	G	V	S	R	L	L	G	A	I	I	E
Template Known Secondary structure		S	S					T	T	T										S		G	G	G																	T						T	T						.	.	T	T	S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		319	320							.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.																	.	.	.
Query SS confidence				.	.	.	.	.	.																	.	.	.
Query Sequence		V	N	.	.	.	.	.	.	P	E	F	K	A	D	P	V	V	D	I	Y	L	V	A	S	.	.	.	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	V	A	V	V	L	G	E
Query Conservation				.	.	.	.	.	.																	.	.	.
Alig confidence				.	.	.	.	.	.																	.	.	.																			.	.
Template Conservation																																															.	.
Template Sequence		A	C	H	D	D	N	G	I	I	W	P	E	A	V	A	P	F	R	V	T	I	L	N	L	K	Q	G	D	A	A	T	D	A	A	C	D	Q	L	Y	R	E	L	S	A	K	.	.	G	V	D	V	L	Y	D	D	T	D	Q	R	A	G	A	K	F	A	T	A	D	L	I	G	I	P	W	Q	I	H	V	G	P
Template Known Secondary structure			S			T	T						T	T	T		S		S						T	T	T	T																		T	.	.	T								S	S														T		S
Template Predicted Secondary structure																																															.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	V	A	N	G	T	A	V	V	K	D	L	R	S	G	E	Q	T	A	V	A	Q	D	S	V	A	A	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	L	A	E	G	K	V	E	L	K	R	R	S	D	G	A	R	E	N	L	A	L	A	D	V	V	A	R	L
Template Known Secondary structure						T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.