Job Description P60906 Confidence 99.88% Date Thu Jan 5 12:07:14 GMT 2012 Rank 43 Aligned Residues 163 % Identity 16% Template c2cj9A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of methanosarcina barkeri seryl-trna2 synthetase complexed with an analog of seryladenylate Resolution 2.3 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																													.																																													.	.	.	.	.	.	.	.
Query SS confidence																													.																																													.	.	.	.	.	.	.	.
Query Sequence		A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	.	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	.	.	.	.	.	.	.	.
Query Conservation																													.																																													.	.	.	.	.	.	.	.
Alig confidence																													.																							.	.																					.	.	.	.	.	.	.	.
Template Conservation																																																				.	.
Template Sequence		S	S	R	G	Q	W	I	H	G	P	Q	S	A	R	I	F	R	T	F	E	K	I	V	L	E	E	L	L	E	P	L	G	Y	R	E	M	I	F	P	K	L	V	T	W	E	V	W	M	K	S	.	.	G	H	A	K	G	V	Y	P	E	I	Y	Y	V	C	P	P	Q	T	R	D	P	D	Y	W	E	E	V	A
Template Known Secondary structure		S	S	T	T																							T	T	T	T	T	T								S											.	.	S	G	G	G	T		G	G	G							B	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
																								78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.						.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.						.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	L	R	P	E	G	T	A	G	C	V	R	A	G	I	E	.	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	.	M	F	R	H	E	.	.	.	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.						.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.																	.						.	.	.
Template Conservation
Template Sequence		D	Y	Y	K	V	T	H	E	V	P	T	K	L	I	K	E	K	I	A	E	P	I	G	G	M	C	Y	A	Q	C	P	P	F	W	M	Y	V	A	G	E	T	L	P	N	E	E	I	P	V	K	V	F	D	R	S	G	T	S	H	R	Y	E	S	G	G	I	H	G	I	E	R	V	D	E	F	H	R	I	E	I
Template Known Secondary structure								S	S										B		S							S	S	S	S	G	G	G	G	G	G	T	T	T					G	G	G		S							S	S								S	S				T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure													.	.														.
Query SS confidence													.	.														.
Query Sequence		E	V	F	G	L	Q	G	P	D	I	D	.	.	A	E	L	I	M	L	T	A	R	W	W	R	A	.	L	G	I	S	E	H	V	T	L	E	L	N	S	I	G	S	L	E	A
Query Conservation													.	.														.
Alig confidence													.	.														.					.	.
Template Conservation																																	.	.
Template Sequence		V	W	I	G	T	K	E	E	V	L	K	C	A	E	E	L	H	D	R	Y	M	H	I	F	N	D	I	L	D	I	E	.	.	W	R	K	A	R	V	T	P	W	F	M	A	Q
Template Known Secondary structure																												T	S				.	.							S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions