Job Description P60906 Confidence 100.00% Date Thu Jan 5 12:07:14 GMT 2012 Rank 3 Aligned Residues 413 % Identity 27% Template c1wu7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of histidyl-trna synthetase from2 thermoplasma acidophilum Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	N	I	Q	A	I	R	G	M	N	D	Y	L	P	G	E	T	A	I	W	Q	R	I	E	G	T	L	K	N	V	L	G	S	Y	G	Y	S	E	I	R	L	P	I	V	E	Q	T	P	L	F	K	R	A	I	G	E	V	T	D	V	V	E	K	E	M	Y	T	F	E	D	R	N	G	D	S	L	T	L
Query Conservation
Alig confidence				.	.																																																								.	.	.
Template Conservation				.	.																																																								.	.	.
Template Sequence		L	Q	.	.	I	E	K	I	R	G	F	R	D	F	Y	P	E	D	X	D	V	E	K	F	I	F	K	T	A	E	E	A	A	E	A	F	G	F	R	R	I	D	F	P	S	L	E	Y	L	D	L	Y	R	I	K	S	G	E	E	.	.	.	L	L	Q	Q	T	Y	S	F	V	D	K	G	G	R	E	V	T	L
Template Known Secondary structure				.	.					T	T																										T	T								S				T					T	T	S		T	T	.	.	.	G	G	G	G	S						T	T	S
Template Predicted Secondary structure				.	.																																																								.	.	.
Template SS confidence
		4	.			.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	E	G	T	A	G	C	V	R	A	G	I	E	H	G	L	L	Y	N	Q	E	Q	R	L	W	Y	I	G	P	M	F	R	H	E	R	P	Q	K	G	R	Y	R	Q	F	H	Q	L	G	C	E	V	F	G	L	Q	G	P	D	I	D	A	E	L	I	M	L	T	A	R	W	W	R	A	L	G	I	S	E	H
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		I	P	E	A	T	P	S	T	V	R	X	V	T	S	R	.	K	D	L	Q	R	P	L	R	W	Y	S	F	P	K	V	W	R	Y	E	E	P	Q	A	G	R	Y	R	E	H	Y	Q	F	N	A	D	I	F	G	S	D	S	P	E	A	D	A	E	V	I	A	L	A	S	S	I	L	D	R	L	G	L	Q	D	I
Template Known Secondary structure			S		S									T	T		.	T	T			S	S															S		S	S			S											S			S																		T	T	T	T	T	S
Template Predicted Secondary structure																	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230									.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.
Query Sequence		V	T	L	E	L	N	S	I	G	S	L	E	A	R	A	N	Y	R	D	A	L	V	A	F	L	E	Q	H	K	E	K	L	D	E	D	C	K	R	R	M	Y	T	N	P	L	R	V	L	D	S	K	N	P	E	V	Q	A	L	L	N	D	A	P	A	L	G	D	Y	L	D	.	.	.	.	.	.	.	.	E	E
Query Conservation																																																																								.	.	.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	E	I	R	I	N	S	R	K	I	X	E	E	I	I	G	G	X	T	S	S	D	P	F	S	V	F	S	I	I	D	R	Y	H	K	I	S	R	E	E	F	V	D	Q	L	R	S	A	G	I	G	E	D	G	V	S	X	I	A	D	L	C	S	G	T	R	G	I	D	E	X	A	R	I	T	G	K	S	S	E
Template Known Secondary structure																		T	T		S	S											T	T	T	T	S												T	T															S		B									T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		S	R	E	H	F	A	G	L	C	K	L	L	E	S	A	G	I	A	.	Y	T	V	N	Q	R	L	V	R	G	L	D	Y	Y	N	R	T	V	F	E	W	V	T	N	S	L	G	S	Q	G	T	V	C	A	G	G	R	Y	D	G	L	V	E	Q	L	G	G	R	A	T	P	A	V	G	F	A	M	G	L	E	R
Query Conservation																				.
Alig confidence																				.																										.
Template Conservation																																														.
Template Sequence		E	I	A	R	X	A	A	V	E	D	L	L	A	S	Y	G	V	K	N	V	R	Y	D	F	S	I	V	R	G	L	S	Y	Y	T	G	I	V	F	E	A	Y	D	R	S	.	G	Q	F	R	A	I	L	G	G	G	R	Y	D	N	L	A	S	L	X	S	G	E	S	V	P	A	V	G	F	G	X	G	D	A	V
Template Known Secondary structure																T	T								T	T			T	T	T	T	T		S	S								T	T	.	S	S		S		S	S						T	T							S
Template Predicted Secondary structure																																														.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	L	L	V	Q	A	V	N	P	E	F	K	A	D	P	V	V	D	I	Y	L	V	A	S	G	A	D	T	Q	S	A	A	M	A	L	A	E	R	L	R	D	E	L	P	G	V	K	L	M	T	N	H	G	G	G	N	F	K	K	Q	F	A	R	A	D	K	W	G	A	R	V	A	V	V	L	G	E	S	E
Query Conservation
Alig confidence												.																																	.	.
Template Conservation												.																																	.	.
Template Sequence		I	S	L	L	L	K	R	E	N	V	.	Q	I	P	R	E	K	K	S	V	Y	I	C	R	V	G	K	I	N	S	S	I	X	N	E	Y	S	R	K	L	R	E	R	.	.	G	X	N	V	T	V	E	I	X	E	R	G	L	S	A	Q	L	K	Y	A	S	A	I	G	A	D	F	A	V	I	F	G	E	R	D
Template Known Secondary structure									T	T		.					S	S									S	S															T	T	.	.	T								S														T	T		S
Template Predicted Secondary structure												.																																	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	N	G	T	A	V	V	K	D	L	R	S	G	E	Q	T	A	V	A	Q	D	S	V	A	A	H	L	R	T	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	R	G	V	V	T	I	R	N	X	Y	T	G	S	Q	E	N	V	G	L	D	S	V	V	E	H	L	I	S	Q	A
Template Known Secondary structure				T	T							T	T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.